Glyma17g00580 - SoyBase

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Report for Sequence Feature Glyma17g00580

Feature Type:	gene_model
Chromosome:	Gm17
Start:	248328
stop:	252498
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g00580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49820	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF647 \| chr5:20246753-20249432 REVERSE LENGTH=497	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4249	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12770	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR12770:SF6	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04884	PFAM	Protein of unknown function, DUF647	JGI		ISS
UniRef100_D7MPF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EMB1879 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MPF6_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1MQT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQT8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g00580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00580

Paralog	Evidence	Comments
Glyma07g40210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g002100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g00580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g00580

Limit To All Plant Sequences

>Glyma17g00580.1   sequence type=CDS   gene model=Glyma17g00580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCGAATCCGATGAAGATGAACATGAAGCAATCTGCCAATTCCACTACAACTACCATAGCTAATAAGGAGATTCTGGTCCGTGAAACGATGCGTATCAGTGCCAATTTGGCTTCCACCCCTCTCCTCGAAGCCCCGCCGCCGCCGTCGCCCATTGTCGGAATCATCTGCTGCGAAGAATTGGATGGGCGTCGTTGGAAGTACGTGGCCGAGAGCGATGCCCGTGGCGGATTCAAGAAGAATTCATTCCGCCCTGTCAGGCTCAACTTCCACAACCCTCGCGACCACCCTCTCCATGAAGTCCTCGCTTTCGTTACATCCTATGTTGTCCCCGAAGGTTTTCCTGATAGTGTTATTCCTTCCTATGTCCCCTACATGACATGGAGGGCTCTTAAGCACTTTTTCGGTGGAGCAATGGGCGTTTTCACAACTCAAACCCTCTTGAGTTCTGTTGGCGTCTCTAGAAACAGAGCTGCTCCTGGGGCTGTCGCCATCAACTGGATTCTCAAGGATGGCGCTGGTCGTGTCGGGAAGATGCTTTTTGCTCGCCAAGGAAAGAAATTTGATTATGACCTCAAACAGCTGCGCTTTGCTGGTGATCTTCTAATGGAGTTGGGTGCTGGAGTTGAACTCGCAACTGCTGCAGTGCCGCATCTCTTTCTTCCATTGGCTTGTGCTGCTAATGTACTCAAGAATGTTGCTGCTGTAACATCAACATCAACTCGCACACCAATTTATAAAGCCTTTGCTAAAGGAGAAAATATAGGGGATGTCACTGCTAAAGGAGAATGTGTTGGCAATATTGCAGACCTGTTAGGAACTGGCTTGAGCATATTGATTGCCAAAAGGAATCCGTCGCTTGTCACCACATTTTCCCTCCTTTCATGTGGATATATCCTTAGCTCTTATAGAGAGGTAAAATCTGTGGTTTTGCACACGCTTAACTGCGGAAGATTCAGTGTTGCAGTAGAGTCTTTTCTCAGGACAGGACAAGTTCCCACTTTGCAGGAGGGCAATATGAATGAGAACATATTCAGTTTTCCATGGAAAGATAGGCCTGTTGTCCTTGGATCAAGAATCAAGGAAGCATTCCAAGACCCTAGTGCATATTTTGCCATAGAGCCCTTGTTTGATAGGGAGAGATATATTGTGACATATAACCCCTCAAAACACAAGGTTTATGCTGTGCTCAAGGATCAGGCGAAGTCAGATGACATTCTGAAAGCAGCATTCCACGCTCATGTGCTATTATTCAATTTGATAAAATCATGGAATGAAAGTAATGCCTCATCTTTGAAGCAAAGGGAGGATCTCTCAAACATGACACACACAGTTGCTGATATCGAGGCTTGTATGGCTGGTACTTGCAAGACCGTGGCAGATTCTTATGGGTTTTTCAAGAATAATGCCAAGGAGCAGGGTTGGACGATGTCAGAATCACATCTAAATCCTGGTCGAGCACGGCTTCATCCAGTTGATAATAATAGATGA

Predicted protein sequences of Glyma17g00580

Limit To All Plant Sequences

>Glyma17g00580.1   sequence type=predicted peptide   gene model=Glyma17g00580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPNPMKMNMKQSANSTTTTIANKEILVRETMRISANLASTPLLEAPPPPSPIVGIICCEELDGRRWKYVAESDARGGFKKNSFRPVRLNFHNPRDHPLHEVLAFVTSYVVPEGFPDSVIPSYVPYMTWRALKHFFGGAMGVFTTQTLLSSVGVSRNRAAPGAVAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFAGDLLMELGAGVELATAAVPHLFLPLACAANVLKNVAAVTSTSTRTPIYKAFAKGENIGDVTAKGECVGNIADLLGTGLSILIAKRNPSLVTTFSLLSCGYILSSYREVKSVVLHTLNCGRFSVAVESFLRTGQVPTLQEGNMNENIFSFPWKDRPVVLGSRIKEAFQDPSAYFAIEPLFDRERYIVTYNPSKHKVYAVLKDQAKSDDILKAAFHAHVLLFNLIKSWNESNASSLKQREDLSNMTHTVADIEACMAGTCKTVADSYGFFKNNAKEQGWTMSESHLNPGRARLHPVDNNR*

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