SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02570 | AT | Annotation by Michelle Graham. TAIR10: nucleic acid binding;RNA binding | chr2:698361-700794 REVERSE LENGTH=300 | SoyBase | E_val: 2.00E-140 | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG3026 | KOG | Splicing factor SPF30 | JGI | ISS | |
| PTHR12664 | Panther | SURVIVAL MOTOR NEURON PROTEIN | JGI | ISS | |
| PF06003 | PFAM | Survival motor neuron protein (SMN) | JGI | ISS | |
| UniRef100_D7LQ48 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LQ48_ARALL | SoyBase | E_val: 3.00E-139 | ISS |
| UniRef100_I1MQT5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQT5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g00560 not represented in the dataset |
Glyma17g00560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g40240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g001900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g00560.2 sequence type=transcript gene model=Glyma17g00560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAGGATCGAAATCGGAAGAAGGATTAGGGTTTGTGGAGATGCAAGGGCAAGGCGTTGATGAAGTGAGCATAGAAGAGTTGGCGTCGAATCTTTCCCTCTACAAAGATCAACTGAACCAGGTTAGAGAACTCTTAAACGATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGGTGAGGGTACTACTACTAGTATTACTGCGGCAATTTGTAATATCATTCAAATTGCTCAACCTCAGGAGGAGCATTAAAAAGTGAGTGTTAGGTCCAAATGCACATCACGTCTATCTTGGTTCTTGTGCAGGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCTCTGCTCCTCCTAATAATGCTGCTGCATCTCCAACCTTGTCCATACATAACGAGAATCAATTGCTAGATAGTAGTTCTGATCATCAAGAGAAACTTCCTGTTGGCACCAAAGTTCAGGCAGTTTGGAGTGAAGATGGGGAGTGGTATGATGCGACAATTGAGGCTTATACTCCAAATGGTTATTATGTAAGCTATGACAATTGGGGTAATAAAGAAGAGGTTGATCCTGCCAATGTAAGGTCAATTCAAGAAGGTTCTGTTGATGCTTTATTAGAAGCTGAGCGAGTTGCTGAAGCAACAAAACAGGCCATCAAACGAAAAATTGCACAAGCTGCATCTATCGATTTACAGTCTCGGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAGTTTCAGTCAACCAAAGGAAAGGCAAAGAAGATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAGAGTTCCAGAAGAGAGAAAAACATTTTCACCTCAAAGATGGTACTGTTGAAAATGATGATTAGGTTATGCACCGACTCGGCTAGATGCCCTTTCAATTGTATGTAACATGCTCAAACAACCATTCTCTGTAGAGGTTCACTGATGGCAAACCAAACAATGTTATCTACTGAAATGTGTCGAGACTTCAGAACTGTTCTAGATTGTAGCTTTCGCCCCACATATATATATTTTTTTTTCTTTCACTATTTTATCATGATGCAATTTTGCTGCCTTTTCATTTTGATGTTATATTAACTAGATGCTCATATTTGTTGGTTTGTTGGTCTTAGCTTTAAATTAGTTATTCGAAAGACGATACTTAGGTGCAGTATTTTATGAAAATTCAAAACTGAATTTCATCTCTCGGTAATAATTCATTAGTTCCTGGTGTCGAGATG
>Glyma17g00560.1 sequence type=CDS gene model=Glyma17g00560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAGGGCAAGGCGTTGATGAAGTGAGCATAGAAGAGTTGGCGTCGAATCTTTCCCTCTACAAAGATCAACTGAACCAGGTTAGAGAACTCTTAAACGATGACCCTGCAAATTCTGAATATGTTGACATGGAGAGGGAACTTTCCGAGGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCTCTGCTCCTCCTAATAATGCTGCTGCATCTCCAACCTTGTCCATACATAACGAGAATCAATTGCTAGATAGTAGTTCTGATCATCAAGAGAAACTTCCTGTTGGCACCAAAGTTCAGGCAGTTTGGAGTGAAGATGGGGAGTGGTATGATGCGACAATTGAGGCTTATACTCCAAATGGTTATTATGTAAGCTATGACAATTGGGGTAATAAAGAAGAGGTTGATCCTGCCAATGTAAGGTCAATTCAAGAAGGTTCTGTTGATGCTTTATTAGAAGCTGAGCGAGTTGCTGAAGCAACAAAACAGGCCATCAAACGAAAAATTGCACAAGCTGCATCTATCGATTTACAGTCTCGGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAGTTTCAGTCAACCAAAGGAAAGGCAAAGAAGATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAGAGTTCCAGAAGAGAGAAAAACATTTTCACCTCAAAGATGGTACTGTTGAAAATGATGATTAG >Glyma17g00560.2 sequence type=CDS gene model=Glyma17g00560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACATCACGTCTATCTTGGTTCTTGTGCAGGTCATTGCCTTGACCGAGGAACTCCTTGCAACTGCAAAGCAGAATGAAATCTCTGCTCCTCCTAATAATGCTGCTGCATCTCCAACCTTGTCCATACATAACGAGAATCAATTGCTAGATAGTAGTTCTGATCATCAAGAGAAACTTCCTGTTGGCACCAAAGTTCAGGCAGTTTGGAGTGAAGATGGGGAGTGGTATGATGCGACAATTGAGGCTTATACTCCAAATGGTTATTATGTAAGCTATGACAATTGGGGTAATAAAGAAGAGGTTGATCCTGCCAATGTAAGGTCAATTCAAGAAGGTTCTGTTGATGCTTTATTAGAAGCTGAGCGAGTTGCTGAAGCAACAAAACAGGCCATCAAACGAAAAATTGCACAAGCTGCATCTATCGATTTACAGTCTCGGAGTCTACCTACAAAGCTTCGTATAGAGGCTGATGATCCTGAGGATGTGAAAGCTTCAAAACGCAAGAAAATACATGCTTTTAAGTCAAAGATGCGGATGGAGCAACTTGAAGTCACACAAAATAAGCGGCAAAATGCTTGGCAGCAGTTTCAGTCAACCAAAGGAAAGGCAAAGAAGATTGGTTTCTTCTCTGGAAGAAAACGGGAGAGTATTTTTAAATCTCCTGATGATCCTCAGGGAAAGGTTGGTGTGACGGGAAGTGGGAAAGGTTTGACAGAGTTCCAGAAGAGAGAAAAACATTTTCACCTCAAAGATGGTACTGTTGAAAATGATGATTAG
>Glyma17g00560.1 sequence type=predicted peptide gene model=Glyma17g00560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQGQGVDEVSIEELASNLSLYKDQLNQVRELLNDDPANSEYVDMERELSEVIALTEELLATAKQNEISAPPNNAAASPTLSIHNENQLLDSSSDHQEKLPVGTKVQAVWSEDGEWYDATIEAYTPNGYYVSYDNWGNKEEVDPANVRSIQEGSVDALLEAERVAEATKQAIKRKIAQAASIDLQSRSLPTKLRIEADDPEDVKASKRKKIHAFKSKMRMEQLEVTQNKRQNAWQQFQSTKGKAKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTEFQKREKHFHLKDGTVENDD* >Glyma17g00560.2 sequence type=predicted peptide gene model=Glyma17g00560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHITSILVLVQVIALTEELLATAKQNEISAPPNNAAASPTLSIHNENQLLDSSSDHQEKLPVGTKVQAVWSEDGEWYDATIEAYTPNGYYVSYDNWGNKEEVDPANVRSIQEGSVDALLEAERVAEATKQAIKRKIAQAASIDLQSRSLPTKLRIEADDPEDVKASKRKKIHAFKSKMRMEQLEVTQNKRQNAWQQFQSTKGKAKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTEFQKREKHFHLKDGTVENDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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