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Report for Sequence Feature Glyma17g00511

Feature Type:gene_model
Chromosome:Gm17
Start:196537
stop:198177
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g00511
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G49880AT Annotation by Michelle Graham. TAIR10: mitotic checkpoint family protein | chr5:20282305-20287775 FORWARD LENGTH=726 SoyBaseE_val: 2.00E-88ISS
GO:0007093GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle checkpoint SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005635GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope SoyBaseN/AISS
PF05557PFAM Mitotic checkpoint protein JGI ISS
UniRef100_B9SPB2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Spindle assembly checkpoint component mad1, putative n=1 Tax=Ricinus communis RepID=B9SPB2_RICCO SoyBaseE_val: 8.00E-109ISS
UniRef100_I1MQT3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQT3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g00511
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g00511 not represented in the dataset
Glyma17g00511 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g00511 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma17g00511
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g00511
>Glyma17g00511.1   sequence type=CDS   gene model=Glyma17g00511   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGTTAGAACTCCACCGCCACCCAAGAGGCCACGCGCCGATGGCGATGACGGACAGCTAGTCATCTACGAGGATCCGCCGGAGTCATCCCCTCCTTCGGAGCAAATGCTCTGCACCTATCAATGTCGCCAAATGGTCAAATCCGATTTTATTGATGCCTTAAGCAAAGCTGAAAATCAAGCTCGTCATTATCAATCCAAGTTTGAGACATTGGAGCCTCATTTCCGCAAAGTTGAATCTGAGAGGAAGAAATTTCAGGACCAATTCTTATACGCCCAACAGGAACTTGCAGCTGCAAAAGGCCGCGAGCAGGCACTCCAAGACCAACTCTTGAAGGAGGCCACTCAGTCTCAAGAACGATTAAGAAAACAAATTCAATTAAACACTCAACTCCAGGTTAAGCTCCAAAATGAGACAGACCTTCGCCAAAAAGCTGACTCTCATGCTGCTTCAACAGAGGAGAAAGCAGCATCTTTAGAAGGAAAACTAGGCCATCTCTCCGAAAGTATAGAGAGGGAAAAAAAGCGACTTCATGATGAGCATTCACAACTGAAAAGCGACTCAAACTTGTCTATTTCTAGAATATCCGCAAATCTTGAACAAATGGAATGCAGAGCTAATAATGCTGAGAAAGAAGCAGAGCTGCTAAAAGAACAACTGAAACATCTTAAGGATCAACTTGATGAGTGTTTGCATCAGAAGATTGAAGTTGAAAAAAAACTATCTACTTTAATGTCTCAAGAAGTTGCTTCTACAGAGAGTAATGTTTTAGTTAAACATTTGCAACAGGAGCTTCGGAACTATGTGAGTTTGCTTTCTTTTTTATCTTGA
Predicted protein sequences of Glyma17g00511
>Glyma17g00511.1   sequence type=predicted peptide   gene model=Glyma17g00511   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIVRTPPPPKRPRADGDDGQLVIYEDPPESSPPSEQMLCTYQCRQMVKSDFIDALSKAENQARHYQSKFETLEPHFRKVESERKKFQDQFLYAQQELAAAKGREQALQDQLLKEATQSQERLRKQIQLNTQLQVKLQNETDLRQKADSHAASTEEKAASLEGKLGHLSESIEREKKRLHDEHSQLKSDSNLSISRISANLEQMECRANNAEKEAELLKEQLKHLKDQLDECLHQKIEVEKKLSTLMSQEVASTESNVLVKHLQQELRNYVSLLSFLS*






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