Glyma17g00490 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g00490

Feature Type:	gene_model
Chromosome:	Gm17
Start:	190557
stop:	196480
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g00490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23390	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink). \| chr2:9960568-9963476 REVERSE LENGTH=469	SoyBase	E_val: 8.00E-118	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04339	PFAM	Protein of unknown function, DUF482	JGI		ISS
UniRef100_I1MQT1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQT1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XRI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: P0076O17.10 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XRI2_ORYSJ	SoyBase	E_val: 1.00E-86	ISS

Expression Patterns of Glyma17g00490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00490

Paralog	Evidence	Comments
Glyma07g40290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g001600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g00490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g00490

Limit To All Plant Sequences

>Glyma17g00490.3   sequence type=transcript   gene model=Glyma17g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGGTGAGTGAGAGTGAGGTGGTGCACTCTGTTTGGGGATTTGGGAAGTTCCATGACAACACTCTGCTTCCGCTGTCAGGGAAACTGGATGCATACAACACCACATCGTTGCCAAAGCCAACAACACCACCATTCTCGCCGTTGTCCCACTCTATGTTAAAACCCATTCCTACGGCTAATGCTTACCATTCTTATGGATACAACTATTACCCCAAGTTACAGTCTTGTGTCCCCTTCGCACCTGTAACTGTTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAATTTTCTCCGCAATCAAGGAACTTACTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGCCACAAGCTCACTGAAAAAGGCTTCCTGCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAACAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATTTAATAAAGGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATTGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCAGCCACGAAGTTACTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTAGCTGCCATTACCTTATTGATAATAATTTATATTTTAGTAGAAATGTATGTACAGCTGAAGTAATGAATACGTTGGCCATTTGGTTCGAAGATGAATGGTCCATGTGTTTGTATTGCTAGAGTAATTCTGTGGTAGTTGTGTTCTGTGTTACCAGTGAATTAAATACGAACATCTCCAATCGTCCAACTGCGATAGAATTGCTGAACTCATTTTGTTTGACTCTATAACACCATATTAAATTTAAGAATTCCAACAAGTTTTCTCTACAATGATACAATGCTTAAGAACTTGAAATGATAAAATGCCATGAGAGATGGTCTAACAGTATTGGTTTGGTTGGTACATTAAGTGGGTGGAGTTTGCAACATTATAAATCCCATTGGAGATGAAATGATAAAATATAAAAGGTTGTACTGTAATATCTAACTTAACGGTTGTGCTGTACAAAATGACACAGACAAACAAGGGAGATGTTGAATTGAAGACTAACCTAACCTAACATTAGTTGTTAATGATTGGGATCAGACAGTGAGAGAAGCACTACTGTCAGCTGGAGTGAGATTGAGAATCATGGTTGCAGCCTTGAGAGCCCATACCTGCGGTGCTTGATAGAGAGAAGTAGATGCACCAAAGCAAGAGGAGAGCATGTTGGTGTTGATTATGTTCCAATTGAGTGCGACCACTGGCATACCTTCCAACACCTCTTTTGCCAGACTTGCTCAGCCCTTTTATCGCCAACTTTGATGCACAATATGGAGCTACCAGCATCGCACCCACCTTCCCCATCCAGAAGACGTGTTCACTATTATCACCTCCATCTTCTTTTCCGCTATGCAACACATTTGTCATCCCCTTCACGTTCATATCCATCATTTCATTGAACACTTTCACAGGAACCTCCCATATCTTGTGGACGATGCAGCTTTCTTACCGTGGACATGGCTGAGAAATTTGGAGAAGGATTTCTCCACTCATTTTAATCAATGGTCTGGCGATCTTAGAGCAGGGTTTATGTATTAGCAGAGGGTACAATTATAGTTTAGAGGTAGCTATTAATACTGTG

Coding sequences of Glyma17g00490

Limit To All Plant Sequences

>Glyma17g00490.1   sequence type=CDS   gene model=Glyma17g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAAAACCCATTCCTACGGCTAATGCTTACCATTCTTATGGATACAACTATTACCCCAAGTTACAGTCTTGTGTCCCCTTCGCACCTGTAACTGTTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAATTTTCTCCGCAATCAAGGAACTTACTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGCCACAAGCTCACTGAAAAAGGCTTCCTGCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATTTAATAAAGGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATTGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCAGCCACGAAGTTACTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGA

>Glyma17g00490.3   sequence type=CDS   gene model=Glyma17g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGGTGAGTGAGAGTGAGGTGGTGCACTCTGTTTGGGGATTTGGGAAGTTCCATGACAACACTCTGCTTCCGCTGTCAGGGAAACTGGATGCATACAACACCACATCGTTGCCAAAGCCAACAACACCACCATTCTCGCCGTTGTCCCACTCTATGTTAAAACCCATTCCTACGGCTAATGCTTACCATTCTTATGGATACAACTATTACCCCAAGTTACAGTCTTGTGTCCCCTTCGCACCTGTAACTGTTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAATTTTCTCCGCAATCAAGGAACTTACTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGCCACAAGCTCACTGAAAAAGGCTTCCTGCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAACAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATTTAATAAAGGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATTGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCAGCCACGAAGTTACTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGA

Predicted protein sequences of Glyma17g00490

Limit To All Plant Sequences

>Glyma17g00490.1   sequence type=predicted peptide   gene model=Glyma17g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKPIPTANAYHSYGYNYYPKLQSCVPFAPVTVPRILLRNTSFKHQIFSAIKELTLTSQLSSLHVTFPSENECHKLTEKGFLPRIGMQYHWKNRNYKNLDDFLMDMKQSKRKNIRQECKKISAQNLIMKRLRGYLIKARHWDSFYTFYRNTTDNKWGTPHLTREFFHELGAKMGDNVLLVVAEEGDELVAGALNLIGGDTLFGRLWGCQPRSYYQAIEAAIELNLKTVEAGAQGEHKIQR*

>Glyma17g00490.3   sequence type=predicted peptide   gene model=Glyma17g00490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVSESEVVHSVWGFGKFHDNTLLPLSGKLDAYNTTSLPKPTTPPFSPLSHSMLKPIPTANAYHSYGYNYYPKLQSCVPFAPVTVPRILLRNTSFKHQIFSAIKELTLTSQLSSLHVTFPSENECHKLTEKGFLPRIGMQYHWKNRNYKNLDDFLMDMKQSKRKNIRQECKKVTNIDMCRFFQQISAQNLIMKRLRGYLIKARHWDSFYTFYRNTTDNKWGTPHLTREFFHELGAKMGDNVLLVVAEEGDELVAGALNLIGGDTLFGRLWGCQPRSYYQAIEAAIELNLKTVEAGAQGEHKIQR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain