SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G23390 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink). | chr2:9960568-9963476 REVERSE LENGTH=469 | SoyBase | E_val: 8.00E-118 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF04339 | PFAM | Protein of unknown function, DUF482 | JGI | ISS | |
| UniRef100_I1MQT1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQT1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q7XRI2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: P0076O17.10 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XRI2_ORYSJ | SoyBase | E_val: 1.00E-86 | ISS |
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Glyma17g00490 not represented in the dataset |
Glyma17g00490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g40290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g001600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g00490.3 sequence type=transcript gene model=Glyma17g00490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCGGTGAGTGAGAGTGAGGTGGTGCACTCTGTTTGGGGATTTGGGAAGTTCCATGACAACACTCTGCTTCCGCTGTCAGGGAAACTGGATGCATACAACACCACATCGTTGCCAAAGCCAACAACACCACCATTCTCGCCGTTGTCCCACTCTATGTTAAAACCCATTCCTACGGCTAATGCTTACCATTCTTATGGATACAACTATTACCCCAAGTTACAGTCTTGTGTCCCCTTCGCACCTGTAACTGTTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAATTTTCTCCGCAATCAAGGAACTTACTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGCCACAAGCTCACTGAAAAAGGCTTCCTGCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAACAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATTTAATAAAGGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATTGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCAGCCACGAAGTTACTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGATATCTTCCTGTGACTACTTTTAGCTGCCATTACCTTATTGATAATAATTTATATTTTAGTAGAAATGTATGTACAGCTGAAGTAATGAATACGTTGGCCATTTGGTTCGAAGATGAATGGTCCATGTGTTTGTATTGCTAGAGTAATTCTGTGGTAGTTGTGTTCTGTGTTACCAGTGAATTAAATACGAACATCTCCAATCGTCCAACTGCGATAGAATTGCTGAACTCATTTTGTTTGACTCTATAACACCATATTAAATTTAAGAATTCCAACAAGTTTTCTCTACAATGATACAATGCTTAAGAACTTGAAATGATAAAATGCCATGAGAGATGGTCTAACAGTATTGGTTTGGTTGGTACATTAAGTGGGTGGAGTTTGCAACATTATAAATCCCATTGGAGATGAAATGATAAAATATAAAAGGTTGTACTGTAATATCTAACTTAACGGTTGTGCTGTACAAAATGACACAGACAAACAAGGGAGATGTTGAATTGAAGACTAACCTAACCTAACATTAGTTGTTAATGATTGGGATCAGACAGTGAGAGAAGCACTACTGTCAGCTGGAGTGAGATTGAGAATCATGGTTGCAGCCTTGAGAGCCCATACCTGCGGTGCTTGATAGAGAGAAGTAGATGCACCAAAGCAAGAGGAGAGCATGTTGGTGTTGATTATGTTCCAATTGAGTGCGACCACTGGCATACCTTCCAACACCTCTTTTGCCAGACTTGCTCAGCCCTTTTATCGCCAACTTTGATGCACAATATGGAGCTACCAGCATCGCACCCACCTTCCCCATCCAGAAGACGTGTTCACTATTATCACCTCCATCTTCTTTTCCGCTATGCAACACATTTGTCATCCCCTTCACGTTCATATCCATCATTTCATTGAACACTTTCACAGGAACCTCCCATATCTTGTGGACGATGCAGCTTTCTTACCGTGGACATGGCTGAGAAATTTGGAGAAGGATTTCTCCACTCATTTTAATCAATGGTCTGGCGATCTTAGAGCAGGGTTTATGTATTAGCAGAGGGTACAATTATAGTTTAGAGGTAGCTATTAATACTGTG
>Glyma17g00490.1 sequence type=CDS gene model=Glyma17g00490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAAAACCCATTCCTACGGCTAATGCTTACCATTCTTATGGATACAACTATTACCCCAAGTTACAGTCTTGTGTCCCCTTCGCACCTGTAACTGTTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAATTTTCTCCGCAATCAAGGAACTTACTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGCCACAAGCTCACTGAAAAAGGCTTCCTGCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATTTAATAAAGGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATTGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCAGCCACGAAGTTACTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGA >Glyma17g00490.3 sequence type=CDS gene model=Glyma17g00490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCGGTGAGTGAGAGTGAGGTGGTGCACTCTGTTTGGGGATTTGGGAAGTTCCATGACAACACTCTGCTTCCGCTGTCAGGGAAACTGGATGCATACAACACCACATCGTTGCCAAAGCCAACAACACCACCATTCTCGCCGTTGTCCCACTCTATGTTAAAACCCATTCCTACGGCTAATGCTTACCATTCTTATGGATACAACTATTACCCCAAGTTACAGTCTTGTGTCCCCTTCGCACCTGTAACTGTTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAATTTTCTCCGCAATCAAGGAACTTACTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGCCACAAGCTCACTGAAAAAGGCTTCCTGCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATCTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGTGCAAAAAGGTTACAAACATTGATATGTGCAGGTTTTTTCAACAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATTTAATAAAGGCTAGGCACTGGGATTCCTTCTACACTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATTGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCAGCCACGAAGTTACTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACAGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGTGA
>Glyma17g00490.1 sequence type=predicted peptide gene model=Glyma17g00490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLKPIPTANAYHSYGYNYYPKLQSCVPFAPVTVPRILLRNTSFKHQIFSAIKELTLTSQLSSLHVTFPSENECHKLTEKGFLPRIGMQYHWKNRNYKNLDDFLMDMKQSKRKNIRQECKKISAQNLIMKRLRGYLIKARHWDSFYTFYRNTTDNKWGTPHLTREFFHELGAKMGDNVLLVVAEEGDELVAGALNLIGGDTLFGRLWGCQPRSYYQAIEAAIELNLKTVEAGAQGEHKIQR* >Glyma17g00490.3 sequence type=predicted peptide gene model=Glyma17g00490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAVSESEVVHSVWGFGKFHDNTLLPLSGKLDAYNTTSLPKPTTPPFSPLSHSMLKPIPTANAYHSYGYNYYPKLQSCVPFAPVTVPRILLRNTSFKHQIFSAIKELTLTSQLSSLHVTFPSENECHKLTEKGFLPRIGMQYHWKNRNYKNLDDFLMDMKQSKRKNIRQECKKVTNIDMCRFFQQISAQNLIMKRLRGYLIKARHWDSFYTFYRNTTDNKWGTPHLTREFFHELGAKMGDNVLLVVAEEGDELVAGALNLIGGDTLFGRLWGCQPRSYYQAIEAAIELNLKTVEAGAQGEHKIQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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