Glyma17g00480 - SoyBase

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Report for Sequence Feature Glyma17g00480

Feature Type:	gene_model
Chromosome:	Gm17
Start:	171545
stop:	190271
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g00480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59610	AT	Annotation by Michelle Graham. TAIR10: dynamin-like 3 \| chr1:21893413-21900780 FORWARD LENGTH=920	SoyBase	E_val: 0	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0072583	GO-bp	Annotation by Michelle Graham. GO Biological Process: clathrin-mediated endocytosis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009504	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell plate	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0045334	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: clathrin-coated endocytic vesicle	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0030276	GO-mf	Annotation by Michelle Graham. GO Molecular Function: clathrin binding	SoyBase	N/A	ISS
KOG0446	KOG	Vacuolar sorting protein VPS1, dynamin, and related proteins	JGI		ISS
PTHR11566	Panther	DYNAMIN	JGI		ISS
PTHR11566:SF10	Panther	DYNAMIN-LIKE	JGI		ISS
PF00169	PFAM	PH domain	JGI		ISS
PF00350	PFAM	Dynamin family	JGI		ISS
PF01031	PFAM	Dynamin central region	JGI		ISS
PF02212	PFAM	Dynamin GTPase effector domain	JGI		ISS
UniRef100_I1MQT0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQT0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SDX4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dynamin homolog n=1 Tax=Astragalus sinicus RepID=Q9SDX4_ASTSI	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g00480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00480

Paralog	Evidence	Comments
Glyma07g40300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g001500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g00480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g00480

Limit To All Plant Sequences

>Glyma17g00480.1   sequence type=CDS   gene model=Glyma17g00480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCAATCGAAGAATTGGTTCAGCTCTCCGATTCCATGCGCCAAGCCGCCGCCGTCCTCGCCGACGAAGATGTCGACAACTACAAGCGCCCTTCCACTTTCCTCAATGTCGTTGCGCTCGGCAATGTTGGTGCTGGAAAATCTGCTTCCTTGAATAGCCTCATTGGACATCCTGTTTTGCCAACTGGTGAGAATGGTGCTACCAGGGCTCCCATTAGCATTGAATTGAATAGAGACACCTCTTTAAGCAGCAAGTCAATCATCCTGCAAATTGACAATAAAACTCAACATGTTTCTGCAAGTGCCCTTCGACATTCTCTACAGGATAGACTAAGCAAAGGTTCATCTGGTAGGAGCCGTGATGAAATATATCTCAAACTACGTACCAGTACTGCGCCTCCATTGAAATTGATTGACTTGCCTGGATTGGACCAGCGGATAGTGGATGACAAAATGATCAGTGAATATGTTGAGCACAATGATGCTATTTTGCTGGTAGTAGTCCCAGCTGCTCAGGCACCAGAAATTTCAACATCACGAGCCCTTAGAGTTGCTAAGGAGTATGATGCAGAATCCACCAGAACTGTTGGCATTATCAGTAAAATTGATCAAGCTTCTTCGGAACCCAAAGCCCTTGCAGCAGTGCAGGCTCTCCTATTGAACCAGGGACCCCCTAAAACCTCTGATATTCCTTGGGTTGCTTTGATAGGGCAATCTGTTTCTATAGCTTCTGCACAGTCTGGGAGTGGAGCGCCCGAGAATTCATTGGAAACTGCTTGGCGTGCTGAAACTGAAAGTTTGAAATCAATATTGACTGGAGCCCCTCAAAGCAAGCTAGGTAGAATTGCTTTGGTTGAGTCTCTTGCTGGACAGATTCGCAATCGTATGAAGCTTAGGCTTCCAACTCTCCTCACTGGTCTTCAGGGAAAGTCTCAAATTGTTCAGGAAGAGTTAGTGAAGTTTGGTGAACAAATGGTTAGTAGTTCCGAAGGTACAAGAGCTCTAGCCTTGCAGTTATGCCGTGAATTTGAGGACAAATTTCTTCAACATCTTACTGGAGGCGAGGGTAATGGTTGGAAAGTTGTTGCCAGTTTTGAAGGGAATTTTCCTAACAGAATCAAGCAACTTCCTATTGACAGACACTTTGACATAAACAATGTCAAGAGGATTGTCCTAGAAGCAGATGGATATCAACCTTATCTGATCTCTCCAGAGAAAGGTTTGAGATCCTTAATTAAAGGCGTTCTTGAACTGGCGAAGGAGCCATCACGATTGTGTGTTGATGAGGTACATCGCGTGCTTGTGGATCTTGTTTCTGCTTCTGCAAATGCAACGCCTGGTCTTGGAAGGTATCCTCCATTCAAGAGAGAGATTGTGGCAATTGCAAGTTCAGCCCTAGAGGCATTTAAAAATGAATCCAAAAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTAGTACAGAGGCGAATGGAAAGGCAACGCCGAGAAGAGGAGCTTAAGAACCGGTCATCCAAAAAGACACTTGATGCAGAACAGTCAATTCTAAATAGGGCAACTAGTCCTCAAACAAGTCAACAAAGTGGGGGAAACTTAAAATCGATGAAAGATAAATCCAGTCAGCAAGACAGGGATACACAAGAGGGATCTGGCTTGAAGACTGCTGGGCCTGAAGGGGAGATAACCGCAGGATATTTGTTGAAAAAAAGTGGAAAAGGTAGTGGTTGGAGCAGACGATGGTTTGTTTTAAATGAGAAGACTGGCAAGCTTGGATACACAAAAAAACAAGAAGAGAGACATTTCCGAGGAGTGATTACATTAGAGGAATGCAATATTGACGAGATTCCTGATGATGATGAAGCCTCCACAAAGAATTCCAAGGATAAAAAGTCCAACGGACCTGATTCTGGAAAAGCATCAAACCTTATTTTCAAGATAACAAGCAAGGTCCCATACAAGACTGTTATGAAATCTGAAAGTGCAGTTTTGTTAAAGGCTGAGAGTATGGCAGATAAGGTTGAGTGGATCAACAAGTTAAGAAGTGTTGCACAGGCTAAAGGAGGTCAAGCCATTGGTGAACCTAGTTTTCCTATGCGGCAAAGCCTTTCTGATGGGTCTCTTGATACGATGGCCAGGAAACCTGCAGATCCAGAGGAGGAGCTCAGATGGATGTCTCAAGAAGTCCGTGGTTATGTTGAAGCTGTTCTTAACAGCCTTGCAGCTAATGTTCCAAAAGCAGTTGTTCTTTGCCAAGTAGAGAAAGCCAAAGAAGACATGCTGAACCAGCTATACAGTTCCGTCAGCGCTCAAAGCTCTGCAAAAATTGAGGAGCTGCTCCAGGAAGACCACAATGTCAAGAACAAAAGGGAGCGAGTTCAGAAACAGTCTGCCCTTCTTTCAAAACTCACTAGGCAGCTTGGTGTCCATGACAATAGAGCGGCTGCAGCATCCAGTTGGTCTGATAGAGGGAGTGCAGCAGAAAGCAGCCCAAGAAGCTCTGGACCCTCATCAGGTGATGATTGGAGGTCTGCATTTGATTCTGCTGCCAATGGTCCAAGCAACCTGACGTCTAGGTATGGTTCTGGTGGTCATAGTAGACGCTACAGTGACCCATCCCAAAATGGTGATGTGAGCTCAGGCTCAAATTCCAACAGTCGTCGGACGCCAACTCGGTTGCCCCCGGCTCCCCCACAATCTGGTTCAAGATATTAG

Predicted protein sequences of Glyma17g00480

Limit To All Plant Sequences

>Glyma17g00480.1   sequence type=predicted peptide   gene model=Glyma17g00480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAIEELVQLSDSMRQAAAVLADEDVDNYKRPSTFLNVVALGNVGAGKSASLNSLIGHPVLPTGENGATRAPISIELNRDTSLSSKSIILQIDNKTQHVSASALRHSLQDRLSKGSSGRSRDEIYLKLRTSTAPPLKLIDLPGLDQRIVDDKMISEYVEHNDAILLVVVPAAQAPEISTSRALRVAKEYDAESTRTVGIISKIDQASSEPKALAAVQALLLNQGPPKTSDIPWVALIGQSVSIASAQSGSGAPENSLETAWRAETESLKSILTGAPQSKLGRIALVESLAGQIRNRMKLRLPTLLTGLQGKSQIVQEELVKFGEQMVSSSEGTRALALQLCREFEDKFLQHLTGGEGNGWKVVASFEGNFPNRIKQLPIDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDLVSASANATPGLGRYPPFKREIVAIASSALEAFKNESKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEELKNRSSKKTLDAEQSILNRATSPQTSQQSGGNLKSMKDKSSQQDRDTQEGSGLKTAGPEGEITAGYLLKKSGKGSGWSRRWFVLNEKTGKLGYTKKQEERHFRGVITLEECNIDEIPDDDEASTKNSKDKKSNGPDSGKASNLIFKITSKVPYKTVMKSESAVLLKAESMADKVEWINKLRSVAQAKGGQAIGEPSFPMRQSLSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSVSAQSSAKIEELLQEDHNVKNKRERVQKQSALLSKLTRQLGVHDNRAAAASSWSDRGSAAESSPRSSGPSSGDDWRSAFDSAANGPSNLTSRYGSGGHSRRYSDPSQNGDVSSGSNSNSRRTPTRLPPAPPQSGSRY*

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