SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G58060 | AT | Annotation by Michelle Graham. TAIR10: RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459 | SoyBase | E_val: 0 | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| KOG0920 | KOG | ATP-dependent RNA helicase A | JGI | ISS | |
| PTHR18934 | Panther | ATP-DEPENDENT RNA HELICASE | JGI | ISS | |
| PTHR18934:SF68 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF04408 | PFAM | Helicase associated domain (HA2) | JGI | ISS | |
| PF07717 | PFAM | Domain of unknown function (DUF1605) | JGI | ISS | |
| UniRef100_B9SSN0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SSN0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EC4F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EC4F related cluster n=1 Tax=unknown RepID=UPI000233EC4F | SoyBase | E_val: 0 | ISS |
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Glyma17g00386 not represented in the dataset |
Glyma17g00386 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g00386.1 sequence type=CDS gene model=Glyma17g00386 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTCGCCGATGTATTTCGGCACTACGTCTAATCCCCAGTCCCATAGCATATTCTCCTCTACTCTGTCAAGGAGTGCAAGATTTTTTAGCCTTCCCACCCATGCATCCTGTAGCCATTTCGGTGCTGTCATAGGAGAAACCTATATCAAGGAAAGGGAGAGTGCTGATTTGAGACAGGCACAACATAGTAAAATGAGAACACAAAGATACCAGGATATGTTGAATATCAGAGCTACGCTTCCTATTGCAGCTCTAAAGGGTGATATATTGAAATTGATGGAGGAACATGATTTTCTTGTTGTTTGTGGGGAAACAGGCTCTGGAAAGACAACTCAGGTTCCACAATTTATATTGGATGACATGATTGAGTCAGGACATGGTGGATATTGTAATATTATTTGCACGCAACCACGGAGAATAGCGGCTGTTTCTGTGGCTGAAAGGGTCGCAGATGAGCGGTGCGAACCTTCACCTGGTTCAGATGGTTCTTTGATTGGTTATCAAGTCCGTCTTGATAGTGCCAGGAATGAGAAAACAAGGCTTCTGTTCTGTACAACAGGCATCCTTCTAAGAAAATTGATGGGGGACCAAAGCTTGTCTGGCATTACTCATATCATAGTTGATGAAGTTCATGAGAGGTCTTTGTTGGGTGATTTTCTTCTAATTGTTTTAAAGAATCTAATTGAGAAGCAGTCCACTAACAGCTCTGGAAAACTGAAGATCATTCTAATGTCTGCAACAGTTGATTCAAGTTTATTTTCAAGATACTTCAACAATTGCCCTGTCGTTACTGCAGAAGGCAGGACTCATCCAGTGACAACATACTTTCTTGAGGATATATATGATCAGATTGAGTATCGACTTGCCTCAGATTCTCCAGCTTCTTTGACAGATGGGACATTTCCCAAAGGACAGATTTTGCAGAGAGATGTTGTGACAAATAGCAGGGGTAAGAAGAATCTAGTCTTATCTGCATGGGGTGACGAGTCTCTGCTTTCTGAAGAACATTTTAATCCATATTTTGTTCCAAGTTATTATCAATTATGTAGTGAACAAACTCAACAAAATATGAAAAGATTGAATGAAGATGTCATTGATTATGATCTTCTTGAAGATCTAATATGTTTCATTGATGAAACTTGCGATGAGGGTGCCATCCTTGTATTTCTACCTGGAATGTCTGAAATAAACTATTTACATGATAAGTTGGTGGCATCTTCCCAATTTGGTGGGCCATCTTCTGAATGGGTTATTCCTTTGCATTCAGCAGTAGCATCAAGTGAACAGAAAAGGGTATTTTTACGTCCTCCAGGAAATATACGTAAGGTCGTTATAGCGACAAATATAGCAGAGACAAGCATAACAATAGATGATGTGATATATGTAATTGATTGTGGAAAGCATAAAGAGAATCGCTACAATCCTCAGAAGAAATTGTCTAGCATGGTTGAAGATTGGATTTCTCGAGCAAATGCAACGCAACGTCGTGGTAGAGCTGGACGTGTAAAACCTGGAATTTGTTTTTCCTTGTACACTCGTCATAGATTTGAAAAGCTCATGCGCCCATATCAGGTTCCGGAGATGCTTCGGATGCCATTAGTTGAATTGTGTTTGCAGATTAAGTTACTGTCTCTTGGATATATCAAGCCATTTTTGTCAGAGGCATTAGAACCTCCCAAGGTTGAAGCAATGGATTCGGCAATATCTTTACTGTATGAGGTTGGTGCTCTTGAAGGGGATGAGGAGTTGACACCACTTGGGCATCATCTGGCAAAACTTCCTGTGGATGTGTTAATTGGGAAGATGATGCTGTATGGTGCAATGTTTGGTTGTTTGTCTCCAATTCTTTCAGTTGCTGCATTTCTGAGTTACAAGTCTCCATTTGTATATCCTAAGGATGAGAGGCAAAATGTTGAAAGAGCAAAGTTGACATTGCTGAATGATAAGCTAGATGGGCCTGGCAACACAAATGATATTGATCGGCAATCTGATCACTTACTGATGATGACAGCTTATAAAAGATGGGAGAGGATTTTGACTGAGAAAGGAGCTAAAGCTGCACAGAAATTCTGCAATTCATTTTTTTTGAGCTGCTCTGTAATGTTTATGATAAGGGAGATGAGGGTACAGTTTGGAACTTTGCTAGCAGACATTGGTCTCATCACTCTTCCGAAAGATTATCAGAAGAATGCAAAAAAGATAGGGAGTCTTGACAGTTGGCTTTCTGATGTGTCACAACCATTTAATATATATGCACATCATTCATCGATTCTTAAGGCTATACTATGTGCAGGTTTATATCCCAATGTAGCAGCTGGTGAACAAGGCATTGTTGCAGCAGTTCTCAGCAGCCTTAAGCAGTCTTCTAGCTCTGCAAGTTCTGGCCGTACAGTCTGGTTTGATGGAAGAAGAGAGGTTCATATTCACCCTTCTTCTATCAACAATAACTCAAAAGGATTCCAGTACCCCTTTCTTGTCTTCCTTGAAAAGGTTGAAACAAACAAAGTATTTCTTCGAGATACTTCAGTCATATCTCCATACTCTATTTTGCTGTTTGGAGGGTCAATCGATGTCCTGCATCAGACTGGACAGCTCATCATTGATGGATGGTTGAAATTGACTGCACCTGCCCAAATAGCTGTCTTGTTCAAGGAGCTACGATTAGCTCTCCATTCCATTCTGAAGGAGCTTATTAGAAAGCCAGAGAATGCAACTGTTCTGAATAATGAGATCATTAAATCTATCATCACTCTGCTTTTGGAAGAAGGGAGCATACCTCAATGA
>Glyma17g00386.1 sequence type=predicted peptide gene model=Glyma17g00386 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSPMYFGTTSNPQSHSIFSSTLSRSARFFSLPTHASCSHFGAVIGETYIKERESADLRQAQHSKMRTQRYQDMLNIRATLPIAALKGDILKLMEEHDFLVVCGETGSGKTTQVPQFILDDMIESGHGGYCNIICTQPRRIAAVSVAERVADERCEPSPGSDGSLIGYQVRLDSARNEKTRLLFCTTGILLRKLMGDQSLSGITHIIVDEVHERSLLGDFLLIVLKNLIEKQSTNSSGKLKIILMSATVDSSLFSRYFNNCPVVTAEGRTHPVTTYFLEDIYDQIEYRLASDSPASLTDGTFPKGQILQRDVVTNSRGKKNLVLSAWGDESLLSEEHFNPYFVPSYYQLCSEQTQQNMKRLNEDVIDYDLLEDLICFIDETCDEGAILVFLPGMSEINYLHDKLVASSQFGGPSSEWVIPLHSAVASSEQKRVFLRPPGNIRKVVIATNIAETSITIDDVIYVIDCGKHKENRYNPQKKLSSMVEDWISRANATQRRGRAGRVKPGICFSLYTRHRFEKLMRPYQVPEMLRMPLVELCLQIKLLSLGYIKPFLSEALEPPKVEAMDSAISLLYEVGALEGDEELTPLGHHLAKLPVDVLIGKMMLYGAMFGCLSPILSVAAFLSYKSPFVYPKDERQNVERAKLTLLNDKLDGPGNTNDIDRQSDHLLMMTAYKRWERILTEKGAKAAQKFCNSFFLSCSVMFMIREMRVQFGTLLADIGLITLPKDYQKNAKKIGSLDSWLSDVSQPFNIYAHHSSILKAILCAGLYPNVAAGEQGIVAAVLSSLKQSSSSASSGRTVWFDGRREVHIHPSSINNNSKGFQYPFLVFLEKVETNKVFLRDTSVISPYSILLFGGSIDVLHQTGQLIIDGWLKLTAPAQIAVLFKELRLALHSILKELIRKPENATVLNNEIIKSIITLLLEEGSIPQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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