Glyma17g00330 - SoyBase

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Report for Sequence Feature Glyma17g00330

Feature Type:	gene_model
Chromosome:	Gm17
Start:	85818
stop:	91000
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g00330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G43945	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). \| chr2:18197995-18199988 REVERSE LENGTH=289	SoyBase	E_val: 6.00E-124	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
UniRef100_I1MQS2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQS2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5ZB95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyanobacteria-specific protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q5ZB95_ORYSJ	SoyBase	E_val: 2.00E-118	ISS

Expression Patterns of Glyma17g00330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00330

Paralog	Evidence	Comments
Glyma07g40350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g000800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g00330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g00330

Limit To All Plant Sequences

>Glyma17g00330.2   sequence type=transcript   gene model=Glyma17g00330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCAGCTCCTAGGTTGGGAGGTTCTCAGCCTTTCCAGTATTGAGAAGGAAAAGGGTAACATTTTGTATTTAGGATTGGATTGGATTCGTAAAGAATATTAAAAAGCGGAAGAAAGCAGAGCAGAGAGGGAGGTGGAAAAAGAAAAAGGAAGAAGGAATGAGTGCAACAGTGACTCTAACTCTAAACCTATGCCGTTCTTCCATCGTCGCTTCTTGTCCACATTATAGCCACAAACCAAACCCTAATTTCAATGCCTTTTTTAGCTTCTCTTTGTCTCTGTCTCTGTCTCACCACAGACGCATCGTTATCTACAAGAAACCATTCCCCTCTAGACGGACGGGACTCTGTTTTTATGTACTGGTATAGTGGCTTTATGGATATATGAATAGAGATCGAGATTATGAATTGGAGAATGGGTTAGCCTTATTCGGTTCTGATGAAGAACTAGCAACACAAATTCCAACTCAGGCCCAGTCACTTGTTGAAGGATCAGGCTCCATTCGCATAGCGGAGTTCAAGCCTGTTCCTGATGTTGATTATCTTCAGGAGTTATTGGCCATTCAACAGCAAGGACCTAGAGCTATTGGCTTTTTTGGAACTCGGAACATGGGATTCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTCATAACTAAAAATCATATATATACATCTGGAGCATCTGGGACTAATGCTGCTGTTATTCGAGGTGCTTTAAGGGCAGAGAAACCAGAGTTGCTTACAGTTATATTACCTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAAGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAAGCCAGCAGGCTATGTAATATGGATATCATTTCGCACGTGCAGCAAGTCATTTGCTTTGCTTTCCATGATAGTAGGTTGCTCATGGAAACTTGTCAAGAAGCAAAAAATTTGCGGAAGATTGTGACTCTTTTCTACCTCGACTGACAATTTTTATCCATGTCTATGCATTATGTCTCCGCATAAGAGTGGGCTGGGGGAGAGTAGTGCTTCTTTTTGGTTTGTAATTAATAATATTCAGTGATATTGCTTTAAATTGCTTCGTTTAGTTCACCTAGAAAGGTCACATTCCTTTTTTTTTTACGAATTTAAATCACATTCCTAGAGAATGGTGGTTGATATTTTTTTAAAGGAATAAGATGTTTCCAAGTATGTGCATGTGTAAGTCTATCAAGGGGGAGAAATCCTGACTGCCTGAGTAATATTTAATGGTAAAGCTA

Coding sequences of Glyma17g00330

Limit To All Plant Sequences

>Glyma17g00330.1   sequence type=CDS   gene model=Glyma17g00330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCAACAGTGACTCTAACTCTAAACCTATGCCGTTCTTCCATCGTCGCTTCTTGTCCACATTATAGCCACAAACCAAACCCTAATTTCAATGCCTTTTTTAGCTTCTCTTTGTCTCTGTCTCTGTCTCACCACAGACGCATCGTTATCTACAAGAAACCATTCCCCTCTAGACGGACGTGGCTTTATGGATATATGAATAGAGATCGAGATTATGAATTGGAGAATGGGTTAGCCTTATTCGGTTCTGATGAAGAACTAGCAACACAAATTCCAACTCAGGCCCAGTCACTTGTTGAAGGATCAGGCTCCATTCGCATAGCGGAGTTCAAGCCTGTTCCTGATGTTGATTATCTTCAGGAGTTATTGGCCATTCAACAGCAAGGACCTAGAGCTATTGGCTTTTTTGGAACTCGGAACATGGGATTCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTCATAACTAAAAATCATATATATACATCTGGAGCATCTGGGACTAATGCTGCTGTTATTCGAGGTGCTTTAAGGGCAGAGAAACCAGAGTTGCTTACAGTTATATTACCTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAAGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAAGCCAGCAGGCTATGTAATATGGATATCATTTCGCACGTGCAGCAAGTCATTTGCTTTGCTTTCCATGATAGTAGGTTGCTCATGGAAACTTGTCAAGAAGCAAAAAATTTGCGGAAGATTGTGACTCTTTTCTACCTCGACTGA

>Glyma17g00330.2   sequence type=CDS   gene model=Glyma17g00330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATAGAGATCGAGATTATGAATTGGAGAATGGGTTAGCCTTATTCGGTTCTGATGAAGAACTAGCAACACAAATTCCAACTCAGGCCCAGTCACTTGTTGAAGGATCAGGCTCCATTCGCATAGCGGAGTTCAAGCCTGTTCCTGATGTTGATTATCTTCAGGAGTTATTGGCCATTCAACAGCAAGGACCTAGAGCTATTGGCTTTTTTGGAACTCGGAACATGGGATTCATGCACCAAGAACTAATTGAGATTCTTAGCTATGCTATGGTCATAACTAAAAATCATATATATACATCTGGAGCATCTGGGACTAATGCTGCTGTTATTCGAGGTGCTTTAAGGGCAGAGAAACCAGAGTTGCTTACAGTTATATTACCTCAAAGTTTAAGCAAACAGCCTCCTGAGAGTCAGGAACTATTGTCCAAAGTGAAAAATGTCATAGAAAAGCCCCATAATGATCATCTACCTCTAATAGAAGCCAGCAGGCTATGTAATATGGATATCATTTCGCACGTGCAGCAAGTCATTTGCTTTGCTTTCCATGATAGTAGGTTGCTCATGGAAACTTGTCAAGAAGCAAAAAATTTGCGGAAGATTGTGACTCTTTTCTACCTCGACTGA

Predicted protein sequences of Glyma17g00330

Limit To All Plant Sequences

>Glyma17g00330.1   sequence type=predicted peptide   gene model=Glyma17g00330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSATVTLTLNLCRSSIVASCPHYSHKPNPNFNAFFSFSLSLSLSHHRRIVIYKKPFPSRRTWLYGYMNRDRDYELENGLALFGSDEELATQIPTQAQSLVEGSGSIRIAEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPELLTVILPQSLSKQPPESQELLSKVKNVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD*

>Glyma17g00330.2   sequence type=predicted peptide   gene model=Glyma17g00330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNRDRDYELENGLALFGSDEELATQIPTQAQSLVEGSGSIRIAEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYAMVITKNHIYTSGASGTNAAVIRGALRAEKPELLTVILPQSLSKQPPESQELLSKVKNVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD*

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