Glyma17g00260 - SoyBase

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Report for Sequence Feature Glyma17g00260

Feature Type:	gene_model
Chromosome:	Gm17
Start:	42386
stop:	46264
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g00260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59910	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr3:22130779-22133033 REVERSE LENGTH=611	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1MQR7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQR7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M1Y3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/ankyrin repeat protein SKIP35 n=1 Tax=Arabidopsis thaliana RepID=SKI35_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g00260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00260

Paralog	Evidence	Comments
Glyma07g40370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g000500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g00260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g00260

Limit To All Plant Sequences

>Glyma17g00260.3   sequence type=transcript   gene model=Glyma17g00260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTAATATAAAAATAGGATATTATTACACCTATATTTGGCGTCGGAAATGAAAGTCTGAAGGAGCATAACAACAACAGGTCAGGGAGCGGGTTTTCTTCTTCCACCCTTTTTTAATTTCTCTCTTCTCTTCTCTGAAGCTATCAGTACTTGCTTTTCATGAATTTGAAACCAGAGGCTAGAGTTCTCCTATTCAGTATCTCATGTGCTTCAAAGAATGGCTGTTAGCTTTACTGGGCTTGACATAGAAGGCAGAGACCAGACAAAATAGAACGTGGCAATGTGACATCTATCTAGTGGAGTAATAATTTATTTGTGATGGATGAAACTGAAGTGGAAAATCCCATATTCATGGAAATTAAATCTGAAGATAAGAGAAATGAAAATCAAGGTTTTGCATCAGAGAAAGGAGAAGGTAGCAGTGTTGTTTTCTCAAGAGAAGCACCACTTATGAGGAAAGAGTCAAGAATGTCCACTCCTTATTGTTGCAATGCTAAGAAGCTCAAATCCAGGGATGTTACAACAGATTGTGAGCTTGGAAGTAATGAGAAATTTGGGTTGGAGAAGAAACTATGTAGACAAGACAGGATTGAGTTGGGTCGGTTGTTTCAGAGTGCAGTGAGTTCCCATGACTGGGAACTTGCTGAAAGTTTGATTTTGGTTGCTGATCCACAGACGCTCAATGATGCCTTGTGTATCACACTGGATTCCATCTGGTTCTTGAGCACAGAGCTAGAGCTTAATGGAATAATGGGATTTATCAAGAAGATCATTGCTAATGGTGCTTATGACTTCACAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCCTGCCAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAGGTTGCATGAGCGTCTCCAGGAATGCAATGGAGATGAAGTATTGAAGGCAGAAGCTGGTGCTAAGGTTCAAAAGTTTACTGAATGGGCTCTGAAATGTATAGGCATCCATTCACGACTGCAGGATGATAGGGAAAATGTGATACACAGCTCAGCCGTTGAAATCCAGCTCCGGTTATCTGCCTTCAAGACATTCCTTGATCTTGCCGGCAGCCGCCTTACAGGGAAGGACTTCAGCGAGGCCTTTGATGCGGCTTGTTTTCCTCTTACTCTTTTCTCAAGCTCATTTGATCCAGGTTGGGCATTTGGCTTGTCAGCTACTGTGATCCAAGGGTTGCTGGGCATGCTAGTGGAGGGGGGTGCAGACAATGTCAATCAGTGTTTCTTGGAGGCTTCACGTTTTGGCAGTACAGAACTTGTGCGCATACTATTGCAGATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTGCCTCCCATTATGGCAAGATAGGAACTATGGAGTGCTTGGTGGAAGAGGGAAATGCCATAGCCTTTTTGGGCCCTTTGATGAGAGCTGCTGAGAGGGGTTGCATGCAAGTTGTTGAGTGGTTTGTGCAGAGGGGTTGCCGAGACATGGAACTATGCCTTGCCCTTACAGCTGCCACTTCTAGCTGCCAAGTTCACATTGCAGCTTATCTTCTGCCGCACGTACCTCAGCAGGTCCTTGCAGCACTTAGTGTTGAAATTCTTAAGGCCGCTGGTGAGCGCAGCGGTGGATCTCTTGATGGTGTAGCATTTCTTCTCCAATCTGACTTCTTAGGTGATCCTGCAGCTACTTATGCTGTTGCAGATATTATTGCTAAATCAGAGGATGAGGCTGTTGCGCCTGAGTTGAAGACTTTTCTTAAGGAGCATTGGTCAGAAGGAGCTTACAAGGAGGGATTAAGGTTAGGGCAAGAGCATTACATGAACCTTGTGAGAATCATTAGATGGGGTGAGTCTCCTATTTGCTTAAGAGATCTTCCGGCCCCACTGACGGTGGCAATTGCTTACCTCCCACTTTATAGAGAGTGTGTCAAGACGGGTGGCTTCTTGTTTTCACAACGGCTTAGGGGACAACTGGTTGAAGCCGCTAGAAGGCTTGGAAATAGGGTCTTGGATGAAGTGATCCATGGTAGAGAGCTAGTGGTCGTTTTGGAACAGCATCTTCCTCACTTTTTGCTCCATCCCACCCGCATTGCTTAGCTAGACTCGGTTGTCAATGTTATGTATTTTTCTTTTTTATTTCCTTTCAACACCCTTCTTTATTTTGTACTGAATGCCACCATTGATAACAATTTTTATCTTGGAGTTAGCCTTTATGGTAGGTTTCCCTCTTTATAACTCAGTGTATTAAATGTGCATATTTTATGTCATAATTGTTGTCATTTATTTCTTGGATGGAAAGTATAAAAAAAATGAAGGATTAGTTGGATGTTGAAGTAAAGATGAAAGGGTTAAGTTAATGAATAATGAAATATTT

Coding sequences of Glyma17g00260

Limit To All Plant Sequences

>Glyma17g00260.2   sequence type=CDS   gene model=Glyma17g00260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAACTGAAGTGGAAAATCCCATATTCATGGAAATTAAATCTGAAGATAAGAGAAATGAAAATCAAGGTTTTGCATCAGAGAAAGGAGAAGGTAGCAGTGTTGTTTTCTCAAGAGAAGCACCACTTATGAGGAAAGAGTCAAGAATGTCCACTCCTTATTGTTGCAATGCTAAGAAGCTCAAATCCAGGGATGTTACAACAGATTGTGAGCTTGGAAGTAATGAGAAATTTGGGTTGGAGAAGAAACTATGTAGACAAGACAGGATTGAGTTGGGTCGGTTGTTTCAGAGTGCAGTGAGTTCCCATGACTGGGAACTTGCTGAAAGTTTGATTTTGGTTGCTGATCCACAGACGCTCAATGATGCCTTGTGTATCACACTGGATTCCATCTGGTTCTTGAGCACAGAGCTAGAGCTTAATGGAATAATGGGATTTATCAAGAAGATCATTGCTAATGGTGCTTATGACTTCACAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCCTGCCAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAGGTTGCATGAGCGTCTCCAGGAATGCAATGGAGATGAAGTATTGAAGGCAGAAGCTGGTGCTAAGGTTCAAAAGTTTACTGAATGGGCTCTGAAATGTATAGGCATCCATTCACGACTGCAGGATGATAGGGAAAATGTGATACACAGCTCAGCCGTTGAAATCCAGCTCCGGTTATCTGCCTTCAAGACATTCCTTGATCTTGCCGGCAGCCGCCTTACAGGGAAGGACTTCAGCGAGGCCTTTGATGCGGCTTGTTTTCCTCTTACTCTTTTCTCAAGCTCATTTGATCCAGGTTGGGCATTTGGCTTGTCAGCTACTGTGATCCAAGGGTTGCTGGGCATGCTAGTGGAGGGGGGTGCAGACAATGTCAATCAGTGTTTCTTGGAGGCTTCACGTTTTGGCAGTACAGAACTTGTGCGCATACTATTGCAGATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTGCCTCCCATTATGGCAAGATAGGAACTATGGAGTGCTTGGTGGAAGAGGGAAATGCCATAGCCTTTTTGGGCCCTTTGATGAGAGCTGCTGAGAGGGGTTGCATGCAAGTTGTTGAGTGGTTTGTGCAGAGGGGTTGCCGAGACATGGAACTATGCCTTGCCCTTACAGCTGCCACTTCTAGCTGCCAAGTTCACATTGCAGCTTATCTTCTGCCGCACGTACCTCAGCAGGTCCTTGCAGCACTTAGTGTTGAAATTCTTAAGGCCGCTGGTGAGCGCAGCGGTGGATCTCTTGATGGTGTAGCATTTCTTCTCCAATCTGACTTCTTAGGTGATCCTGCAGCTACTTATGCTGTTGCAGATATTATTGCTAAATCAGAGGATGAGGCTGTTGCGCCTGAGTTGAAGACTTTTCTTAAGGAGCATTGGTCAGAAGGAGCTTACAAGGAGGGATTAAGGTTAGGGCAAGAGCATTACATGAACCTTGTGAGAATCATTAGATGGGGTGAGTCTCCTATTTGCTTAAGAGATCTTCCGGCCCCACTGACGGTGGCAATTGCTTACCTCCCACTTTATAGAGAGTGTGTCAAGACGGGTGGCTTCTTGTTTTCACAACGGCTTAGGGGACAACTGGTTGAAGCCGCTAGAAGGCTTGGAAATAGGGTCTTGGATGAAGTGATCCATGGTAGAGAGCTAGTGGTCGTTTTGGAACAGCATCTTCCTCACTTTTTGCTCCATCCCACCCGCATTGCTTAG

>Glyma17g00260.3   sequence type=CDS   gene model=Glyma17g00260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAAACTGAAGTGGAAAATCCCATATTCATGGAAATTAAATCTGAAGATAAGAGAAATGAAAATCAAGGTTTTGCATCAGAGAAAGGAGAAGGTAGCAGTGTTGTTTTCTCAAGAGAAGCACCACTTATGAGGAAAGAGTCAAGAATGTCCACTCCTTATTGTTGCAATGCTAAGAAGCTCAAATCCAGGGATGTTACAACAGATTGTGAGCTTGGAAGTAATGAGAAATTTGGGTTGGAGAAGAAACTATGTAGACAAGACAGGATTGAGTTGGGTCGGTTGTTTCAGAGTGCAGTGAGTTCCCATGACTGGGAACTTGCTGAAAGTTTGATTTTGGTTGCTGATCCACAGACGCTCAATGATGCCTTGTGTATCACACTGGATTCCATCTGGTTCTTGAGCACAGAGCTAGAGCTTAATGGAATAATGGGATTTATCAAGAAGATCATTGCTAATGGTGCTTATGACTTCACAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCCTGCCAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAGGTTGCATGAGCGTCTCCAGGAATGCAATGGAGATGAAGTATTGAAGGCAGAAGCTGGTGCTAAGGTTCAAAAGTTTACTGAATGGGCTCTGAAATGTATAGGCATCCATTCACGACTGCAGGATGATAGGGAAAATGTGATACACAGCTCAGCCGTTGAAATCCAGCTCCGGTTATCTGCCTTCAAGACATTCCTTGATCTTGCCGGCAGCCGCCTTACAGGGAAGGACTTCAGCGAGGCCTTTGATGCGGCTTGTTTTCCTCTTACTCTTTTCTCAAGCTCATTTGATCCAGGTTGGGCATTTGGCTTGTCAGCTACTGTGATCCAAGGGTTGCTGGGCATGCTAGTGGAGGGGGGTGCAGACAATGTCAATCAGTGTTTCTTGGAGGCTTCACGTTTTGGCAGTACAGAACTTGTGCGCATACTATTGCAGATTGCTCAAAGAAACAGCTTGGATGTTGATGTTGACTTGGCGTTGGGTTTTGCCTCCCATTATGGCAAGATAGGAACTATGGAGTGCTTGGTGGAAGAGGGAAATGCCATAGCCTTTTTGGGCCCTTTGATGAGAGCTGCTGAGAGGGGTTGCATGCAAGTTGTTGAGTGGTTTGTGCAGAGGGGTTGCCGAGACATGGAACTATGCCTTGCCCTTACAGCTGCCACTTCTAGCTGCCAAGTTCACATTGCAGCTTATCTTCTGCCGCACGTACCTCAGCAGGTCCTTGCAGCACTTAGTGTTGAAATTCTTAAGGCCGCTGGTGAGCGCAGCGGTGGATCTCTTGATGGTGTAGCATTTCTTCTCCAATCTGACTTCTTAGGTGATCCTGCAGCTACTTATGCTGTTGCAGATATTATTGCTAAATCAGAGGATGAGGCTGTTGCGCCTGAGTTGAAGACTTTTCTTAAGGAGCATTGGTCAGAAGGAGCTTACAAGGAGGGATTAAGGTTAGGGCAAGAGCATTACATGAACCTTGTGAGAATCATTAGATGGGGTGAGTCTCCTATTTGCTTAAGAGATCTTCCGGCCCCACTGACGGTGGCAATTGCTTACCTCCCACTTTATAGAGAGTGTGTCAAGACGGGTGGCTTCTTGTTTTCACAACGGCTTAGGGGACAACTGGTTGAAGCCGCTAGAAGGCTTGGAAATAGGGTCTTGGATGAAGTGATCCATGGTAGAGAGCTAGTGGTCGTTTTGGAACAGCATCTTCCTCACTTTTTGCTCCATCCCACCCGCATTGCTTAG

Predicted protein sequences of Glyma17g00260

Limit To All Plant Sequences

>Glyma17g00260.2   sequence type=predicted peptide   gene model=Glyma17g00260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDETEVENPIFMEIKSEDKRNENQGFASEKGEGSSVVFSREAPLMRKESRMSTPYCCNAKKLKSRDVTTDCELGSNEKFGLEKKLCRQDRIELGRLFQSAVSSHDWELAESLILVADPQTLNDALCITLDSIWFLSTELELNGIMGFIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGIHSRLQDDRENVIHSSAVEIQLRLSAFKTFLDLAGSRLTGKDFSEAFDAACFPLTLFSSSFDPGWAFGLSATVIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVEWFVQRGCRDMELCLALTAATSSCQVHIAAYLLPHVPQQVLAALSVEILKAAGERSGGSLDGVAFLLQSDFLGDPAATYAVADIIAKSEDEAVAPELKTFLKEHWSEGAYKEGLRLGQEHYMNLVRIIRWGESPICLRDLPAPLTVAIAYLPLYRECVKTGGFLFSQRLRGQLVEAARRLGNRVLDEVIHGRELVVVLEQHLPHFLLHPTRIA*

>Glyma17g00260.3   sequence type=predicted peptide   gene model=Glyma17g00260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDETEVENPIFMEIKSEDKRNENQGFASEKGEGSSVVFSREAPLMRKESRMSTPYCCNAKKLKSRDVTTDCELGSNEKFGLEKKLCRQDRIELGRLFQSAVSSHDWELAESLILVADPQTLNDALCITLDSIWFLSTELELNGIMGFIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECNGDEVLKAEAGAKVQKFTEWALKCIGIHSRLQDDRENVIHSSAVEIQLRLSAFKTFLDLAGSRLTGKDFSEAFDAACFPLTLFSSSFDPGWAFGLSATVIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYGKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVEWFVQRGCRDMELCLALTAATSSCQVHIAAYLLPHVPQQVLAALSVEILKAAGERSGGSLDGVAFLLQSDFLGDPAATYAVADIIAKSEDEAVAPELKTFLKEHWSEGAYKEGLRLGQEHYMNLVRIIRWGESPICLRDLPAPLTVAIAYLPLYRECVKTGGFLFSQRLRGQLVEAARRLGNRVLDEVIHGRELVVVLEQHLPHFLLHPTRIA*

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