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Report for Sequence Feature Glyma17g00245

Feature Type:gene_model
Chromosome:Gm17
Start:31875
stop:36406
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G63670AT Annotation by Michelle Graham. TAIR10: SPT4 homolog 2 | chr5:25488012-25489044 FORWARD LENGTH=94 SoyBaseE_val: 8.00E-14ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006366GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0032786GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of DNA-dependent transcription, elongation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
UniRef100_G7J900UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription elongation factor SPT4-like protein n=1 Tax=Medicago truncatula RepID=G7J900_MEDTR SoyBaseE_val: 1.00E-11ISS
UniRef100_I1KNU2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KNU2_SOYBN SoyBaseE_val: 4.00E-12ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g00245 not represented in the dataset

Glyma17g00245 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma07g40390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g00245.1   sequence type=CDS   gene model=Glyma17g00245   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTGCACCTGCACAAATTCCTACAAGCTTTGGCCATGAGTTGAGGGCTTGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGGTCTTAGTACCCTACTACCCTTTATTTTTCATCATTGTTTTTTGTTTACAATTTCTGTTTTTGTTTCACAGTTCAGAGAGTCAGGCTGTGAGAACTGCTCATTCTTTAAGATGGAAGAAGATCACGAGCGTGTTGTTGATTGCACTACTCCCAATTTTAATGGGATCATTTCAGTTATGGATCCAAATCGGAGTTGGGCTGCCCGTTGGTTGCGCATTGGAAAGTTTGTTCCTGGTGTTTATACTCTTGCTGTCTCAGAGGCTCTTCCTGAAGAGATGCAGGCTATATGTGAAGACGAGCGTGTGCAGTATATCCCTCCCAAACGTTTGTGAATGA

>Glyma17g00245.1   sequence type=predicted peptide   gene model=Glyma17g00245   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAPAQIPTSFGHELRACLRCRLVKTYDQVLVPYYPLFFIIVFCLQFLFLFHSSESQAVRTAHSLRWKKITSVLLIALLPILMGSFQLWIQIGVGLPVGCALESLFLVFILLLSQRLFLKRCRLYVKTSVCSISLPNVCE*







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