Glyma17g00230 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma17g00230

Feature Type:	gene_model
Chromosome:	Gm17
Start:	21662
stop:	23475
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g00230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44370	AT	Annotation by Michelle Graham. TAIR10: phosphate transporter 4;6 \| chr5:17875147-17876445 REVERSE LENGTH=432	SoyBase	E_val: 0	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005315	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic phosphate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0008514	GO-mf	Annotation by Michelle Graham. GO Molecular Function: organic anion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
KOG2532	KOG	Permease of the major facilitator superfamily	JGI		ISS
PTHR11662	Panther	PHOSPHATE TRANSPORTER-RELATED	JGI		ISS
PTHR11662:SF23	Panther	SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATED	JGI		ISS
PF07690	PFAM	Major Facilitator Superfamily	JGI		ISS
UniRef100_B9SVU4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: D-galactonate transporter, putative n=1 Tax=Ricinus communis RepID=B9SVU4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MQR4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQR4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g00230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g00230

Paralog	Evidence	Comments
Glyma07g40400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g00230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g000300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g00230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g00230

Limit To All Plant Sequences

>Glyma17g00230.1   sequence type=CDS   gene model=Glyma17g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACATTGTAACAGCCAAAGGCAGGTGGAATCCAATTCTCAAACCCCAATCGTTAGACTAAGCAAGAGGTCGTTCAGTTCAATGAAGCTCCCTGTGCGTTACTTGATTGTTATTTTGACCTTCGTCTGCACCTCGGTTTGCTACATCGAACGAGTTGGGTTTTCCATCGCGTACACAGTTGCTGCTGACGGTGCCGGAGTGAATCAATCGAGCAAAGGTACAATACTGTCCACCTTCTATTACGGATACGCCTGTTCTCAAGTTCCCGGAGGATGGGCAGCTCAGAAAATCGGGGGGAGGAGGGTCCTGCTTCTTTCCTTTCTGTTGTGGTCATTAACTTGTGCACTACTTCCTCTAGATCCCAATCGCGTTATGCTTTTAGTCATTGCTCGTTTGCTCGTTGGTATAGCACAAGGCTTCATTTTCCCCTCCATCCACACAGTTCTAGCTCAATGGGTTCCCCCTCACGAGAGATCTAGATCCGTCTCTCTCACCACTTCTGGGATGTACCTAGGTGCAGCTCTAGGTATGCTTCTTCTTCCTACTCTAGTCAAGTTCAGAGGTCCTCAATCTGTGTTTCTTGCGGAGGCCGCATTGGGCGCTTCATGGTCTTTACTTTGGTTCAAATACGCCACTGATCCCAAATCCACTGCCTCTGGTGTCGGGGAATCAGTCTTGCCCGTCAATAAAAAAATTGACACTCACAACAAAAAACCGCTTTCAGCCAAAATCCCCTGGGTCAAAATTTTAACCAGCTTCCCTGTGTGGGCGATTGTTGTCAACAATTTCACCTTTCACTATGCTTTATATGTGCTCATGAACTGGCTCCCAACCTACTTTGAATTGGGCCTTCAGCTTAGCCTGCAAGATATGGGTTCCTCTAAAATGATGCCCTATCTCAACATGTTCCTCTTCTCCAACATTGGCGGTGTTGTCGCGGACTACTTGATCACCAGGAGAATATTATCTGTCACCAAAACCAGGAAATTCTTGAACACTGTCGGATTCTTGGTTGCTTCTCTTGCCTTGGTGATCATTCCCAGTTTCAGAACTTCTGGTGGTGCTGTCTTCTGTTCTTCCGTGGCTCTTGGTTTCTTGGCACTTGGCAGAGCTGGCTTTGCCGTGAACCACATGGACATTGCTCCTAGATACGCTGGAATAGTGATGGGTGTTTCTAATACTGCCGGTACGTTAGCTGGCATTGTTGGCGTTGACCTGACTGGGAAGCTTCTTGAAGCTGCTAAGGCTGCTAATTCTGATCTTTCAAGTCCAGAAAGCTGGAGGGCAGTGTTTTCCATTCCTGGGTTTCTATGCATTTTTAGTTCTTTTGTATTTCTACTATTTTCAACTGGGGAGAGAATTTTTGATTGA

Predicted protein sequences of Glyma17g00230

Limit To All Plant Sequences

>Glyma17g00230.1   sequence type=predicted peptide   gene model=Glyma17g00230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTHCNSQRQVESNSQTPIVRLSKRSFSSMKLPVRYLIVILTFVCTSVCYIERVGFSIAYTVAADGAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRRVLLLSFLLWSLTCALLPLDPNRVMLLVIARLLVGIAQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAALGMLLLPTLVKFRGPQSVFLAEAALGASWSLLWFKYATDPKSTASGVGESVLPVNKKIDTHNKKPLSAKIPWVKILTSFPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMMPYLNMFLFSNIGGVVADYLITRRILSVTKTRKFLNTVGFLVASLALVIIPSFRTSGGAVFCSSVALGFLALGRAGFAVNHMDIAPRYAGIVMGVSNTAGTLAGIVGVDLTGKLLEAAKAANSDLSSPESWRAVFSIPGFLCIFSSFVFLLFSTGERIFD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain