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Report for Sequence Feature Glyma17G07200

Feature Type:gene_model
Chromosome:Gm17
Start:5277405
stop:5279027
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17G07200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G57520AT Annotation by Michelle Graham. TAIR10: zinc finger protein 2 | chr5:23296019-23296471 FORWARD LENGTH=150 SoyBaseE_val: 1.00E-28ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR10042Panther EARLY GROWTH RESPONSE PROTEIN JGI ISS
PTHR10042:SF14Panther ZFP4 (ZINC FINGER PROTEIN 4), NUCLEIC ACID BINDING JGI ISS
UniRef100_G7JVH8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7JVH8_MEDTR SoyBaseE_val: 2.00E-47ISS
UniRef100_I1MSS4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MSS4_SOYBN SoyBaseE_val: 1.00E-94ISS

Proteins Associated with Glyma17G07200
LocusGene SymbolProtein Name
UC2 Uncharacterized protein 2

Expression Patterns of Glyma17G07200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17G07200
ParalogEvidenceComments
Glyma13g01090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17G07200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g064700 Wm82.a2.v1IGC As supplied by JGI
Glyma17g07200 Wm82.a1.v1.1IGC Correspondences based on a combination of genome sequence coordinate overlap (fjoin) and sequence similarity (ungapped blastn)

References for Glyma17G07200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17G07200
>Glyma17g07200.2   sequence type=CDS   gene model=Glyma17g07200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTCCATAACCCCAATACTTCTCTTCACCTAAGCCAACACGATGATGAGAACCATCTCAACCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCTTCATCTTCACCTTCACCTATTTGTTCCATGGAGCCACGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCACTAGGGGGTCACCAAAATGCCCACAAGCTTGAAAGGACACTGGCCAAGAAGAGCAGGGAACTGAGTTTGAACATGCAATCTTATGGAGCAGCGGAGCAAAGATCAAACTTTGGTGCTTCACACCATCTTGGTCATCGTGCTCTTGGGGTTGTGGATAACCAAGGACAAAGTTATGTGAGGCTTGGTGGAAGGAAAGAGTTCAGTTATGGTTCCAAGGAAGGGGTAGGGGTGGCTTCCTGGTCAAGGGCTTCTGAACATGTTCAGGAGGATATGGGCCAACTTGACTTGTCGTTAAGGCTTTGA
Predicted protein sequences of Glyma17G07200
>Glyma17g07200.2   sequence type=predicted peptide   gene model=Glyma17g07200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFHNPNTSLHLSQHDDENHLNLDLLLEPSSSSSSSPSPICSMEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSLNMQSYGAAEQRSNFGASHHLGHRALGVVDNQGQSYVRLGGRKEFSYGSKEGVGVASWSRASEHVQEDMGQLDLSLRL*






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