SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G08670 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51540.1); Has 48380 Blast hits to 29827 proteins in 1356 species: Archae - 46; Bacteria - 5589; Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses - 905; Other Eukaryotes - 9050 (source: NCBI BLink). | chr3:2633946-2636536 FORWARD LENGTH=567 | SoyBase | E_val: 5.00E-81 | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| UniRef100_B9SRR8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRR8_RICCO | SoyBase | E_val: 6.00E-111 | ISS |
| UniRef100_UPI000233F1D7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F1D7 related cluster n=1 Tax=unknown RepID=UPI000233F1D7 | SoyBase | E_val: 0 | ISS |
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Glyma16g34680 not represented in the dataset |
Glyma16g34680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g00400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g220600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g34680.3 sequence type=transcript gene model=Glyma16g34680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTGTGTATCATTATTCTAGAGAGAAACTAAACGAGAGGGACAAGCAGTGAGGAAGAATGAAGAATGAATGAATGTCATGAAACAAAAGTTAAGTAACCTCAATAAAGTTAGAGCATGAATTTAATTGAACCCCCCGACACTCTCGGTTTGTGCTTGTGTGTTGACGTACAAACAAGTGAATGGTTTTGCTCTTGCTTGCCACCTACAACACTGCAATGCACTCTCATTCTCCCACTCCAATTAATCCAAAGCACCACAACTCATCATAGCTCATATGTTCTCATACAATAATATAACACCACATGAATGCAAGTAACAGCGTTGAGTTGTTGTTGTTGGCATCATGAACAGCAGGAATGTGAATGTGAATCAGCATCATCACCGCAGAGGTCACAGCTTCAATGGCTCTGCCAACATCCATCCCATCTCCAACACAATTAATTCTTCCCATGGAAAACTGGGGAAACTCTCGTTTGAATCAGCAAAACTGGCCACAAGTGGGATTGATGATCTATTGTCATCCACAGAAGGAGGAAAGCATGACTATGATTGGCTCCTTACTCCCCCGGGGACCCCTCATTTACCATCATCAGAAGGTGAATCCCAACCAACTTTGGTGCCTCCAAGAAGCAGTTTGGGTAGATTAAAGTCAAACATTAGTGTCTCAAGGCTTTCAGTCTCACAATCAGAGAACAACAATCATTCTCATTCTCACTCTAGACCATCAAGAAGTGGTTCAGTGACTCGCAGTCCAAACAGATCCTCTTCCATCCTTAACACAAGGCCATCCTCCCCCATAACTGCGGCAAGGCTTTCCACTCCAACCTCTCGCACAACATCAACATCAACACCCCCCAGAGTACTACTACCACGCTCATTTCCAAGTCCAATCAACACATCATCAACTGACACCAACAAAACTAGAACATCACAAGGCTCAAGGCCATCCACTCCAAGCTCAACTTCAAAGCCATCCATTCCTGCCACTTTGCGGCCCTCTACCCCCACTCGACGCCATTCACTGCCATCTCCATCGCCTTCAGTCACACGTGTGGGGCGTAATCCAGCTACACCGCGTCTCCAGCCAGTTGTCCCTCCTGATTTTCCCCTTGAAACACCACCAAACCTCAGAACAACATTGCCTGCTGATAGGCCTGTCTCTGCAGGCAGGTCTCGTCCTGGTGCTGTTGTTACTCTTCCTTCGAAGCCAAACTCAGAAATGCAAGCCCCAGTTAACATGTCAAGGAGACAGCCATCTCCTATTGCCAATAGGGGCAGACTGTCAGAGTACACAGCAAAAAGCCGCGGCCATGCCAATGCTGCTGATGCCTCTGAGGTAGTTGCTAGAAGATCTGCTAAGTCTTCAACTACTGCCTCAGAAAACAATGTATTGGGAAGGACCATCTCAAAGAAATCATTGGATATGGCTATTAGACACATGGACCACTCAGGCTCTGCACCATAATGTTGTGACCAGACTAGTACTTTAAATGAAAATCCTGGTTTAAGGTTCTGTTTGGATGAAAATCTTAATAAATACAAATGGAAGAAGAAAATAAGAAGATAAAAAGAATTAAGTTTCTTTCTCTCATAGGTTAAAATCAACTTATACACTTCAACTTTAATACAAACTTTCTCATTTAACTCCTCCAAAAGTTGGATAAAAGTTGAAGTGCATCATAAGTTGATTAGAAAATCAATTTATTTTATCTTCTTATTTTCTTCTCCCTGGAACGAGC
>Glyma16g34680.2 sequence type=CDS gene model=Glyma16g34680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAGCAGGAATGTGAATGTGAATCAGCATCATCACCGCAGAGGTCACAGCTTCAATGGCTCTGCCAACATCCATCCCATCTCCAACACAATTAATTCTTCCCATGGAAAACTGGGGAAACTCTCGTTTGAATCAGCAAAACTGGCCACAAGTGGGATTGATGATCTATTGTCATCCACAGAAGGAGGAAAGCATGACTATGATTGGCTCCTTACTCCCCCGGGGACCCCTCATTTACCATCATCAGAAGGTGAATCCCAACCAACTTTGGTGCCTCCAAGAAGCAGTTTGGGTAGATTAAAGTCAAACATTAGTGTCTCAAGGCTTTCAGTCTCACAATCAGAGAACAACAATCATTCTCATTCTCACTCTAGACCATCAAGAAGTGGTTCAGTGACTCGCAGTCCAAACAGATCCTCTTCCATCCTTAACACAAGGCCATCCTCCCCCATAACTGCGGCAAGGCTTTCCACTCCAACCTCTCGCACAACATCAACATCAACACCCCCCAGAGTACTACTACCACGCTCATTTCCAAGTCCAATCAACACATCATCAACTGACACCAACAAAACTAGAACATCACAAGGCTCAAGGCCATCCACTCCAAGCTCAACTTCAAAGCCATCCATTCCTGCCACTTTGCGGCCCTCTACCCCCACTCGACGCCATTCACTGCCATCTCCATCGCCTTCAGTCACACGTGTGGGGCGTAATCCAGCTACACCGCGTCTCCAGCCAGTTGTCCCTCCTGATTTTCCCCTTGAAACACCACCAAACCTCAGAACAACATTGCCTGCTGATAGGCCTGTCTCTGCAGGCAGGTCTCGTCCTGGTGCTGTTGTTACTCTTCCTTCGAAGCCAAACTCAGAAATGCAAGCCCCAGTTAACATGTCAAGGAGACAGCCATCTCCTATTGCCAATAGGGGCAGACTGTCAGAGTACACAGCAAAAAGCCGCGGCCATGCCAATGCTGCTGATGCCTCTGAGGTAGTTGCTAGAAGATCTGCTAAGTCTTCAACTACTGCCTCAGAAAACAATGTATTGGGAAGGACCATCTCAAAGAAATCATTGGATATGGCTATTAGACACATGGATGTGAGGAACAGCTCAGGAACTCTTCGTTCAGTTCCAAGCGCCACACTCTATCCTCAGAGCATTCGAACTTCAACTCCCAAGACACACCACACTAGAGGTTTGAGTGTTCCAGTGTCAATGAACATTAACGGAAGCCTCCAAAGCAGAAATAATAATAATAACAATAATAGGAAAAATGGAAGAGAGATAGGTGAAAGGCAAAAGCAATACTTGGGAAAATTGAGTGAAGTAGTGGATGTGTACGAGAGTTATCGTTATGATTCACTGTTGCTTAAAGAAGACTTAAACAACACAAACTGGCTGCGTAGTGTTGATGATAAATGTGATCAAGGACCCATCTTTGACAATGGATTTGAGTACCTGCCTGAACCTTTTGGACTCTTTTAG >Glyma16g34680.3 sequence type=CDS gene model=Glyma16g34680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAGCAGGAATGTGAATGTGAATCAGCATCATCACCGCAGAGGTCACAGCTTCAATGGCTCTGCCAACATCCATCCCATCTCCAACACAATTAATTCTTCCCATGGAAAACTGGGGAAACTCTCGTTTGAATCAGCAAAACTGGCCACAAGTGGGATTGATGATCTATTGTCATCCACAGAAGGAGGAAAGCATGACTATGATTGGCTCCTTACTCCCCCGGGGACCCCTCATTTACCATCATCAGAAGGTGAATCCCAACCAACTTTGGTGCCTCCAAGAAGCAGTTTGGGTAGATTAAAGTCAAACATTAGTGTCTCAAGGCTTTCAGTCTCACAATCAGAGAACAACAATCATTCTCATTCTCACTCTAGACCATCAAGAAGTGGTTCAGTGACTCGCAGTCCAAACAGATCCTCTTCCATCCTTAACACAAGGCCATCCTCCCCCATAACTGCGGCAAGGCTTTCCACTCCAACCTCTCGCACAACATCAACATCAACACCCCCCAGAGTACTACTACCACGCTCATTTCCAAGTCCAATCAACACATCATCAACTGACACCAACAAAACTAGAACATCACAAGGCTCAAGGCCATCCACTCCAAGCTCAACTTCAAAGCCATCCATTCCTGCCACTTTGCGGCCCTCTACCCCCACTCGACGCCATTCACTGCCATCTCCATCGCCTTCAGTCACACGTGTGGGGCGTAATCCAGCTACACCGCGTCTCCAGCCAGTTGTCCCTCCTGATTTTCCCCTTGAAACACCACCAAACCTCAGAACAACATTGCCTGCTGATAGGCCTGTCTCTGCAGGCAGGTCTCGTCCTGGTGCTGTTGTTACTCTTCCTTCGAAGCCAAACTCAGAAATGCAAGCCCCAGTTAACATGTCAAGGAGACAGCCATCTCCTATTGCCAATAGGGGCAGACTGTCAGAGTACACAGCAAAAAGCCGCGGCCATGCCAATGCTGCTGATGCCTCTGAGGTAGTTGCTAGAAGATCTGCTAAGTCTTCAACTACTGCCTCAGAAAACAATGTATTGGGAAGGACCATCTCAAAGAAATCATTGGATATGGCTATTAGACACATGGACCACTCAGGCTCTGCACCATAA
>Glyma16g34680.2 sequence type=predicted peptide gene model=Glyma16g34680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSRNVNVNQHHHRRGHSFNGSANIHPISNTINSSHGKLGKLSFESAKLATSGIDDLLSSTEGGKHDYDWLLTPPGTPHLPSSEGESQPTLVPPRSSLGRLKSNISVSRLSVSQSENNNHSHSHSRPSRSGSVTRSPNRSSSILNTRPSSPITAARLSTPTSRTTSTSTPPRVLLPRSFPSPINTSSTDTNKTRTSQGSRPSTPSSTSKPSIPATLRPSTPTRRHSLPSPSPSVTRVGRNPATPRLQPVVPPDFPLETPPNLRTTLPADRPVSAGRSRPGAVVTLPSKPNSEMQAPVNMSRRQPSPIANRGRLSEYTAKSRGHANAADASEVVARRSAKSSTTASENNVLGRTISKKSLDMAIRHMDVRNSSGTLRSVPSATLYPQSIRTSTPKTHHTRGLSVPVSMNINGSLQSRNNNNNNNRKNGREIGERQKQYLGKLSEVVDVYESYRYDSLLLKEDLNNTNWLRSVDDKCDQGPIFDNGFEYLPEPFGLF* >Glyma16g34680.3 sequence type=predicted peptide gene model=Glyma16g34680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNSRNVNVNQHHHRRGHSFNGSANIHPISNTINSSHGKLGKLSFESAKLATSGIDDLLSSTEGGKHDYDWLLTPPGTPHLPSSEGESQPTLVPPRSSLGRLKSNISVSRLSVSQSENNNHSHSHSRPSRSGSVTRSPNRSSSILNTRPSSPITAARLSTPTSRTTSTSTPPRVLLPRSFPSPINTSSTDTNKTRTSQGSRPSTPSSTSKPSIPATLRPSTPTRRHSLPSPSPSVTRVGRNPATPRLQPVVPPDFPLETPPNLRTTLPADRPVSAGRSRPGAVVTLPSKPNSEMQAPVNMSRRQPSPIANRGRLSEYTAKSRGHANAADASEVVARRSAKSSTTASENNVLGRTISKKSLDMAIRHMDHSGSAP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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