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Report for Sequence Feature Glyma16g34560

Feature Type:gene_model
Chromosome:Gm16
Start:37180137
stop:37183351
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G59960AT Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr1:22071410-22073067 REVERSE LENGTH=326 SoyBaseE_val: 1.00E-114ISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1577 KOG Aldo/keto reductase family proteins JGI ISS
PTHR11732Panther ALDO/KETO REDUCTASE JGI ISS
PTHR11732:SF34Panther 3-CHLOROBENZOATE-3,4-DIOXYGENASE DYHYDROGENASE-RELATED JGI ISS
PF00248PFAM Aldo/keto reductase family JGI ISS
UniRef100_G7JL30UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-dependent 6'-deoxychalcone synthase n=1 Tax=Medicago truncatula RepID=G7JL30_MEDTR SoyBaseE_val: 6.00E-163ISS
UniRef100_I1MQN4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MQN4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g29991 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g219400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g34560.2   sequence type=transcript   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAAATGCGAAGGGGGAAAATTCAGTTAATTTGGCAGATATTAATCCATGTTTCTAGTTTTCTACGTAGGCATAGCATAACGTGTGAATACAAACAATTGACTTACTAGATAAAACTTCCATATATACTAACAACATTCAACACGTATCAGCAGACCCAAAAGAAGATATGGAAGCAAAGAAAATCCCAGAAGTGATACTAAACTCAGGGAAAAAGATGCCAGTGATAGGCCTAGGAACCGCATCAATTCCTCTTCCATCACATGAAGCTCTCACCTCCATCCTTATTGATGCCTTTGAGGTTGGCTACAGACACTTTGATACTGCTTCTCTGTATGAAAGTGAGGAGTCTCTAGGCAAAGCTGTGGCAAAGGCCTTAGAGCTAGGCCTCATAAATAGCAGAGAGGAATTATTCATCACATCAAAACTATGGTCCACTGATGCTCATCCTGACCTTGTTGTTCCAGCTCTTAAGACCTCCCTGCAGAAGTTGGGATTGGAGTATGTAGATCTCTATTTGATTCATTGGCCAGTGAGGCTGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAGGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCTATTGGTGTTAGCAACTTCGGCATCAAAAAGCTAAGCCAGCTCCTGGAAAATGCAACCATCCCTCCTGCTGTCAATCAGGTGGAAATGAGCCCAGCATGGCAGCAGGGGAAACTCAAAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGCTCAAGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATTGCTTGTGAACGACAGAAGAGCATGGCTCAGGTGCTCTTAGTATCTCAGTCTTAAATCATCATCCATTACAACTCTACTTTTTTTTACCATGAATTTCAAAATCTATAACAAAATATAATGGCAATAAGATCTTCTAGTCTCTACTCTTTTTTTCATGTCTTTAGCCAAGTACATATTTGAAGTGTAACATTTCTTTATTTCTACCATTCAATAAAAATAAACTGAGGTGTATGCTCAACCTTGACCATTTAGAACAAGTTTCAGCAGCACTATCCAATAACTTTAACTTGAATGAGAGTAGTATTTATGGGTGTGTAAGTTTGTGCTAGCATGGTTACTCAACTCAAGATATAAATATATTTTTTTATAGTTGATGGTTCAAAAGAAAACTATAAGTATATTTGCAATGGGCAATGTCATTGTCATGCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGTGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAAGAGGAATCACAGAAATTCAGCCAGATTCCGCAGCGTAGGATGTATCGCGGAATAACTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATTGAGATTCCTGAAATCATTCCTAATAGCAGCAAAATGTCATATAAGGCTGTGTTTGGTTTAAGATGGGAGGAGGGAACTAGGAGAGAAATTTTGTACTTTTCATGTGGAACTCACATCTTTTACACTTTAATAAAACAAAAAAAATCTTCTATTTCTATCCTCTAAACCAAACACACCCTAAATGTGTATCTCTATATTTACGTATGCAACCCATGGCATGGATTCATCAATGTTGCCGGGCCATTTAAAGGAATAAGATGGATAGAAAAAGAATTCCTGGCATTTTAATAAAAACTCACTTTATATTCTTCCCTTGTTCTTAAAATTTCACACACACACGTGATACTTCTAGATCTCCAAGACAGTTTATTGCTTCATCGATCAAAATTAGCCTAACAACAAAATTAGGCTAATGCTTCATCGAACAAACCCTCTCTACAAAGTCTATCGATCATAACAGTATACAACGGGACATCAAGTTGATAGCCTTTAATCAAGAGATCCTGAAAAACCTCTTGTGCATTGTTGAGGACTACCTTCATTCTCATCATGCATCCTTAAGCCTTTCACCTTTACACAGCCCATCAATAAATATTGTATATGTGTAATATATTTGGCTGAATTCCCTGGTCTTCAGTTTTATTGAATAATGCAGTTGCTCTATCAAGATGACAATTTTTGCACAAAGCATCAAATAAGGAATTGTAAGTGATTATATTGTCATGTAGACCTCTAAAAACTTTATTTGTA

>Glyma16g34560.3   sequence type=transcript   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAAATGCGAAGGGGGAAAATTCAGTTAATTTGGCAGATATTAATCCATGTTTCTAGTTTTCTACGTAGGCATAGCATAACGTGTGAATACAAACAATTGACTTACTAGATAAAACTTCCATATATACTAACAACATTCAACACGTATCAGCAGACCCAAAAGAAGATATGGAAGCAAAGAAAATCCCAGAAGTGATACTAAACTCAGGGAAAAAGATGCCAGTGATAGGCCTAGGAACCGCATCAATTCCTCTTCCATCACATGAAGCTCTCACCTCCATCCTTATTGATGCCTTTGAGGTTGGCTACAGACACTTTGATACTGCTTCTCTGTATGAAAGTGAGGAGTCTCTAGGCAAAGCTGTGGCAAAGGCCTTAGAGCTAGGCCTCATAAATAGCAGAGAGGAATTATTCATCACATCAAAACTATGGTCCACTGATGCTCATCCTGACCTTGTTGTTCCAGCTCTTAAGACCTCCCTGCAGAAGTTGGGATTGGAGTATGTAGATCTCTATTTGATTCATTGGCCAGTGAGGCTGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAGGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCTATTGGTGTTAGCAACTTCGGCATCAAAAAGCTAAGCCAGCTCCTGGAAAATGCAACCATCCCTCCTGCTGTCAATCAGGTATGAAGTTTTAGCAATTGCATGCAGGTTGATATTTACGCAGCAATGAAACACTTGGCGGTGTTGATTCCTTCCATTGGTTTTAGGTGGAAATGAGCCCAGCATGGCAGCAGGGGAAACTCAAAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGCTCAAGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATTGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGTGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAAGAGGAATCACAGAAATTCAGCCAGATTCCGCAGCGTAGGATGTATCGCGGAATAACTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATTGAGATTCCTGAAATCATTCCTAATAGCAGCAAAATGTCATATAAGGCTGTGTTTGGTTTAAGATGGGAGGAGGGAACTAGGAGAGAAATTTTGTACTTTTCATGTGGAACTCACATCTTTTACACTTTAATAAAACAAAAAAAATCTTCTATTTCTATCCTCTAAACCAAACACACCCTAAATGTGTATCTCTATATTTACGTATGCAACCCATGGCATGGATTCATCAATGTTGCCGGGCCATTTAAAGGAATAAGATGGATAGAAAAAGAATTCCTGGCATTTTAATAAAAACTCACTTTATATTCTTCCCTTGTTCTTAAAATTTCACACACACACGTGATACTTCTAGATCTCCAAGACAGTTTATTGCTTCATCGATCAAAATTAGCCTAACAACAAAATTAGGCTAATGCTTCATCGAACAAACCCTCTCTACAAAGTCTATCGATCATAACAGTATACAACGGGACATCAAGTTGATAGCCTTTAATCAAGAGATCCTGAAAAACCTCTTGTGCATTGTTGAGGACTACCTTCATTCTCATCATGCATCCTTAAGCCTTTCACCTTTACACAGCCCATCAATAAATATTGTATATGTGTAATATATTTGGCTGAATTCCCTGGTCTTCAGTTTTATTGAATAATGCAGTTGCTCTATCAAGATGACAATTTTTGCACAAAGCATCAAATAAGGAATTGTAAGTGATTATATTGTCATGTAGACCTCTAAAAACTTTATTTGTA

>Glyma16g34560.4   sequence type=transcript   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTATACTTTGTTTCTCTGGTTGCATCCTATGTAATTATAAGTTTCCTCAAAACTGTTTAGGAAGTTGGGATTGGAGTATGTAGATCTCTATTTGATTCATTGGCCAGTGAGGCTGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAGGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCTATTGGTGTTAGCAACTTCGGCATCAAAAAGCTAAGCCAGCTCCTGGAAAATGCAACCATCCCTCCTGCTGTCAATCAGGTGGAAATGAGCCCAGCATGGCAGCAGGGGAAACTCAAAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGCTCAAGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATTGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGTGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAAGAGGAATCACAGAAATTCAGCCAGATTCCGCAGCGTAGGATGTATCGCGGAATAACTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATTGAGATTCCTGAAATCATTCCTAATAGCAGCAAAATGTCATATAAGGCTGTGTTTGGTTTAAGATGGGAGGAGGGAACTAGGAGAGAAATTTTGTACTTTTCATGTGGAACTCACATCTTTTACACTTTAATAAAACAAAAAAAATCTTCTATTTCTATCCTCTAAACCAAACACACCCTAAATGTGTATCTCTATATTTACGTATGCAACCCATGGCATGGATTCATCAATGTTGCCGGGCCATTTAAAGGAATAAGATGGATAGAAAAAGAATTCCTGGCATTTTAATAAAAACTCACTTTATATTCT

>Glyma16g34560.1   sequence type=CDS   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAAGAAAATCCCAGAAGTGATACTAAACTCAGGGAAAAAGATGCCAGTGATAGGCCTAGGAACCGCATCAATTCCTCTTCCATCACATGAAGCTCTCACCTCCATCCTTATTGATGCCTTTGAGGTTGGCTACAGACACTTTGATACTGCTTCTCTGTATGAAAGTGAGGAGTCTCTAGGCAAAGCTGTGGCAAAGGCCTTAGAGCTAGGCCTCATAAATAGCAGAGAGGAATTATTCATCACATCAAAACTATGGTCCACTGATGCTCATCCTGACCTTGTTGTTCCAGCTCTTAAGACCTCCCTGCAGAAGTTGGGATTGGAGTATGTAGATCTCTATTTGATTCATTGGCCAGTGAGGCTGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAGGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCTATTGGTGTTAGCAACTTCGGCATCAAAAAGCTAAGCCAGCTCCTGGAAAATGCAACCATCCCTCCTGCTGTCAATCAGGTGGAAATGAGCCCAGCATGGCAGCAGGGGAAACTCAAAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGCTCAAGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATTGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGTGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAAGAGGAATCACAGAAATTCAGCCAGATTCCGCAGCGTAGGATGTATCGCGGAATAACTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATTGA

>Glyma16g34560.2   sequence type=CDS   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAAGAAAATCCCAGAAGTGATACTAAACTCAGGGAAAAAGATGCCAGTGATAGGCCTAGGAACCGCATCAATTCCTCTTCCATCACATGAAGCTCTCACCTCCATCCTTATTGATGCCTTTGAGGTTGGCTACAGACACTTTGATACTGCTTCTCTGTATGAAAGTGAGGAGTCTCTAGGCAAAGCTGTGGCAAAGGCCTTAGAGCTAGGCCTCATAAATAGCAGAGAGGAATTATTCATCACATCAAAACTATGGTCCACTGATGCTCATCCTGACCTTGTTGTTCCAGCTCTTAAGACCTCCCTGCAGAAGTTGGGATTGGAGTATGTAGATCTCTATTTGATTCATTGGCCAGTGAGGCTGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAGGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCTATTGGTGTTAGCAACTTCGGCATCAAAAAGCTAAGCCAGCTCCTGGAAAATGCAACCATCCCTCCTGCTGTCAATCAGGTGGAAATGAGCCCAGCATGGCAGCAGGGGAAACTCAAAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGCTCAAGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATTGCTTGTGAACGACAGAAGAGCATGGCTCAGGTGCTCTTAGTATCTCAGTCTTAA

>Glyma16g34560.3   sequence type=CDS   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAAGAAAATCCCAGAAGTGATACTAAACTCAGGGAAAAAGATGCCAGTGATAGGCCTAGGAACCGCATCAATTCCTCTTCCATCACATGAAGCTCTCACCTCCATCCTTATTGATGCCTTTGAGGTTGGCTACAGACACTTTGATACTGCTTCTCTGTATGAAAGTGAGGAGTCTCTAGGCAAAGCTGTGGCAAAGGCCTTAGAGCTAGGCCTCATAAATAGCAGAGAGGAATTATTCATCACATCAAAACTATGGTCCACTGATGCTCATCCTGACCTTGTTGTTCCAGCTCTTAAGACCTCCCTGCAGAAGTTGGGATTGGAGTATGTAGATCTCTATTTGATTCATTGGCCAGTGAGGCTGAAACCTGAAGCCAAAGGGTACCATAATATATTAAAGGAGAATGTGCTTCCCTCCTTTGACATGAAAGGAATATGGGAGGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCTATTGGTGTTAGCAACTTCGGCATCAAAAAGCTAAGCCAGCTCCTGGAAAATGCAACCATCCCTCCTGCTGTCAATCAGGTATGA

>Glyma16g34560.4   sequence type=CDS   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAATATGGGAGGCTATGGAAGAGTGTTACAGATTGGGCTTAGCCAAGTCTATTGGTGTTAGCAACTTCGGCATCAAAAAGCTAAGCCAGCTCCTGGAAAATGCAACCATCCCTCCTGCTGTCAATCAGGTGGAAATGAGCCCAGCATGGCAGCAGGGGAAACTCAAAGAATTCTGCAAGCAGAAAGGAATTCATGTGAGTGCATGGTCACCACTAGGAGCTTACAAAAGTGCTCAAGGTACAAATGCAGTTATGGAGAGCCCAATCCTTAAGGAAATTGCTTGTGAACGACAGAAGAGCATGGCTCAGATTGCACTAAGATGGATATATGAGCAAGGGGCAATTGCAATTGTGAAAAGCTTCAACAAGGAGAGGATGAAACAAAACCTTGACATATTTGACTGGGAACTGAGCCAAGAGGAATCACAGAAATTCAGCCAGATTCCGCAGCGTAGGATGTATCGCGGAATAACTTTTGTATCAGAAAATGGGCCTTACAAGACCTTGGAAGAGCTTTGGGATTGA

>Glyma16g34560.1   sequence type=predicted peptide   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKKIPEVILNSGKKMPVIGLGTASIPLPSHEALTSILIDAFEVGYRHFDTASLYESEESLGKAVAKALELGLINSREELFITSKLWSTDAHPDLVVPALKTSLQKLGLEYVDLYLIHWPVRLKPEAKGYHNILKENVLPSFDMKGIWEAMEECYRLGLAKSIGVSNFGIKKLSQLLENATIPPAVNQVEMSPAWQQGKLKEFCKQKGIHVSAWSPLGAYKSAQGTNAVMESPILKEIACERQKSMAQIALRWIYEQGAIAIVKSFNKERMKQNLDIFDWELSQEESQKFSQIPQRRMYRGITFVSENGPYKTLEELWD*

>Glyma16g34560.2   sequence type=predicted peptide   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKKIPEVILNSGKKMPVIGLGTASIPLPSHEALTSILIDAFEVGYRHFDTASLYESEESLGKAVAKALELGLINSREELFITSKLWSTDAHPDLVVPALKTSLQKLGLEYVDLYLIHWPVRLKPEAKGYHNILKENVLPSFDMKGIWEAMEECYRLGLAKSIGVSNFGIKKLSQLLENATIPPAVNQVEMSPAWQQGKLKEFCKQKGIHVSAWSPLGAYKSAQGTNAVMESPILKEIACERQKSMAQVLLVSQS*

>Glyma16g34560.3   sequence type=predicted peptide   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKKIPEVILNSGKKMPVIGLGTASIPLPSHEALTSILIDAFEVGYRHFDTASLYESEESLGKAVAKALELGLINSREELFITSKLWSTDAHPDLVVPALKTSLQKLGLEYVDLYLIHWPVRLKPEAKGYHNILKENVLPSFDMKGIWEAMEECYRLGLAKSIGVSNFGIKKLSQLLENATIPPAVNQV*

>Glyma16g34560.4   sequence type=predicted peptide   gene model=Glyma16g34560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGIWEAMEECYRLGLAKSIGVSNFGIKKLSQLLENATIPPAVNQVEMSPAWQQGKLKEFCKQKGIHVSAWSPLGAYKSAQGTNAVMESPILKEIACERQKSMAQIALRWIYEQGAIAIVKSFNKERMKQNLDIFDWELSQEESQKFSQIPQRRMYRGITFVSENGPYKTLEELWD*







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