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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17740 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Virus | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR13471 | Panther | TETRATRICOPEPTIDE-LIKE HELICAL | JGI | ISS | |
| PF08424 | PFAM | Protein of unknown function (DUF1740) | JGI | ISS | |
| UniRef100_Q9LUM5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Similarity to unknown protein n=1 Tax=Arabidopsis thaliana RepID=Q9LUM5_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F1D2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F1D2 related cluster n=1 Tax=unknown RepID=UPI000233F1D2 | SoyBase | E_val: 0 | ISS |
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Glyma16g34520 not represented in the dataset |
Glyma16g34520 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g29980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g219200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g34520.1 sequence type=CDS gene model=Glyma16g34520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCAAAAACCACCGTCTCCGGCGGAAAACTCGGCGGCGGCGGCGCCATCCTCCGACGAAGCAAAACCTTCCCTATTCCCTCTGTTCCCACTCACAGCCTCTTCCTCTCTCCAAACCACCACCACTTCCTCCACTCCTCAATGGCTCAGCAACACCAGCTTCACCACCGACATCTCCGTCATAAACGACGTCGTCGCCTCGCAACTCAACCGCGAAACGATGCAGTCACCGCTACAAGACGACAACGACGAGGACGAAAATCGCGCACAGGCGAATCCCGTCCCTTCTTCTCGGTACGAGATTCTGGAATCTTCCGAATCCGACGGAGGCGGAAGAGATAGAGAGAGGAAGAAGAGAAAGAAGAGGAAGAAGCGGAAGCGCGATTCGTCTGCGGAGAGAGGTGGATTCAACGCTTTCGGTTCGAGGAAGTCGCGCGTTCGAGCTTGGGTGGATTCGGAGGCCAAAGTTGCCAAGGATTATTACATTGATTCTCACGGAGATCGCGATAATCTCGCGTTCGGATGCATCTACAGAATGGATATTGCCCGATACAAGCCTTACAATCCCTTGAAACTGTCTGGGCTACATGTTCGAGGTTTGTATTGGTGGAATCGGAGTGGTTCACTATTGGAAAGAGATGGTGATGTCGATGCATTGGATGCTAAAATGAAGTGTGCTGGTCGTTACTGGTCTGGAAAATACATGGCTTTGGAACGACATAAGAGCTTTAAGCGTATTCATCTTGTTGCTCCAAAATTGTCTCCTGTCACTATGCAAGATGAGTTTATACCTTTATCAGAATCAGATGCTGGGGCATCTCATGGAGCTGTTGACAGTGATTCAGTCTCCAAAACTTCAGCATCACTTGAAGAATCATGGGAAGATGAAATGTTAAACAAAACTAGGGAGTTCAACAAACTAACTAGGGAACACCCCCATGATGAAAAAGTTTGGTTAGCTTTTGCAGAGTTCCAAGATAAGGTTGCAGGGATGCAACGACAGAAAGGTGCTCGCTTGCAAACTCTTGCAAAGAAGATTAGCATTCTGGAGAAGGCAGTTGAGCTTAATCCAGACAATGAAGAGATATTGCTTTGTCTTTTGAAAGCTTATCAAATGAGAGACAGCTCAGATGTGCTAATTGCAAGATGGGAGAAGATACTTTTGCAACACTCTGGAAGTTATAAGTTATGGAGAGAATTCTTGCACATTGTTCAGAGAAATTTCTCCAGATTTAAGGTTTCAGAGGTTAGGAAGATGTATGCACATGCAATTGAAGCTCTATCTGCTTCATGCAGCAAGCACTCTAGGCAGGTTCTTCAAGCTGCCAATCCTTCTTCACCAGATCCTGTATTTGTTCAGTTAGAACTTGGTCTTGTGGATATATTTCTTAGTCTTTGCAGATTTGAGTGGCAGACTGGTTATAGAGAATTGGCCACTGCTTTATTTCAGGCTGAAATAGAGTTTAGTTTATTTTGTCCTCCTTTGCTGCTCACTGAGCAGAGTAAACACAGACTGTTTGAGCATTTTTGGAACAGTGGTGGTGCTAGAGTTGGGGAAGAAGGGGCTCTTGGTTGGTCCACATGGTTGGAGAAAGAGGAGGAAACTAGGCAACGGGTTATGAATGAGGAGCTCTCACGTGAAAATGAAGGTGGTGGTTGGACTGGTTGGTCAGAACCATGGTCTAAAGATAATGAGGGTATTGCCAATGTTGAACATGAAACCATGAATGACGTGGTTATGGAGGATATTCAAGATGAAGAGGAATACACAGAAGTTGAGCCAGAAGTTGATACTGAAGATTTGCTGAAGATGCTAGGAATTGATATGAATGATGGGGATGGTGGTGAAGTTAATGACACTTTGACTTGGATCAAATGGTCAAAAGAAGAGTCTTCTAGAGATTGTGATCAGTGGATGCCTGTTCGTGGGAAATCAGGTACAACCTCTCCTGCTAACGAAGCAGACAAAACAGATGAGGATGAACAACTCTTGAGAGTTGTATTGTATGAAGATGTGAATGAATACTTGTTCTCCCTGAGCACAACAGAGGCTCGACTATCTTTGTTGTCCCAATTCATAGACTTCTATGGTGGAAAGATGTCTCAATTGTTTTGCTCAAACAGCCCAACAAGGGCTGACAATATCCTTAGTTTGGAGGATTTGCCAGATTCTATGTTGGAGAAGTTGAAATGCATCCATGAAGTTTTGACTAAACAACAGAACAGTCTTGCTGGTTTCAGTTTTGAATTCCTATCAGGCAGTCTCTCGAGGAATGCTGATATTATGAAATTTATACGGAATGCTGTCTTACTTTGTTTAACTGTTTTCCCACGTAATTATATGTTGGAAGAAGCTGTTCTTATTTCTGAAGAGCTTTATGTTACAAAAATGAATTCTTCTAATGGTATGATTACACCATGTCGATCTTTAGCAAAATCTCTTCTAAAAAGTGATCGACAGGATTTGTTGCTATGCGGTGTATATGCACGAAGAGAGGCTACTTATGGTAACATTGATCACGCAAGAAAAGTGTTTGACATGGCATTGTTATCTGTAGAAGCGCTTCCTGTGGAACTACAGTCCAATGCTCCTCTTCTATATTTCTGGTATGCTGAGGTGGAGCTTGCAAATAACTCTGCTAATGATCGTGAATCTTCATCTCGTGGAATACATATATTATCATGCTTAGGAAGTGGTACAAAGTACAACCCATTTAAAAGTCAAGCATCAAGTTTGCTACTGCTTAGAGCACATCAAGGATTTAAAGAAAAACTGAGAACAGTGTGGTCATCTTGGGTTCGTGGTATAATAAATGACCAGTCTGTAGCTCTAATATGTTCTGCTGCATTGTTTGAGGAGCTAACCACTGGATGGGATGCGGGCATTGAAGTTTTGAATCAAGCTTTTTCAATGGTGCTTCCAGAAAGAAGAAGTCAAGGTTATCAGCTTGAATTTTTGTTTAATTATTATATAAAGATGCTTCAAAGACATCAGAGACAATCAAGTCTGATGAAAGTTTGGGAGTCCATCTTGCATGGCCTCCAGATATATCCCTTTAGTCCTGAACTTCTAAAAGATGTGGTGGAGGTTGGCCATTATTACACTACATCTAATAAATTGCGGCGGATTCTAGATGACTGTAGTTACAAGAAACCATCTGTAGTTCTCTGGCTTTTTGCGTTGTCATACGAAATATTTAAAGGTGGTTCACACCACAGAATCCGTGGATTGTTCGAAAAGGCATTGGCTAACGACAAGCTTTGCAGCTCAGTTTTGCTGTGGCGTTGCTATATTATGTTTGAGATGGAAATTGCACATGATCCTTCTGCAGCTCGACGTGCTTTCTTCCGGGCTATCCATTCCTGCCCCTGGTCAAAAAGGCTATGGTTGGATGGCTTTCTCAAGCTGAACTCTGTCCTTACTGCAAAAGAGCTATCTGATCTACAGGAAGTCATGCGTGATAAGGAACTGAATTTGAGAACTGACATTTATGAGATCCTTTTGCAACAGTCGTGA
>Glyma16g34520.1 sequence type=predicted peptide gene model=Glyma16g34520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQKPPSPAENSAAAAPSSDEAKPSLFPLFPLTASSSLQTTTTSSTPQWLSNTSFTTDISVINDVVASQLNRETMQSPLQDDNDEDENRAQANPVPSSRYEILESSESDGGGRDRERKKRKKRKKRKRDSSAERGGFNAFGSRKSRVRAWVDSEAKVAKDYYIDSHGDRDNLAFGCIYRMDIARYKPYNPLKLSGLHVRGLYWWNRSGSLLERDGDVDALDAKMKCAGRYWSGKYMALERHKSFKRIHLVAPKLSPVTMQDEFIPLSESDAGASHGAVDSDSVSKTSASLEESWEDEMLNKTREFNKLTREHPHDEKVWLAFAEFQDKVAGMQRQKGARLQTLAKKISILEKAVELNPDNEEILLCLLKAYQMRDSSDVLIARWEKILLQHSGSYKLWREFLHIVQRNFSRFKVSEVRKMYAHAIEALSASCSKHSRQVLQAANPSSPDPVFVQLELGLVDIFLSLCRFEWQTGYRELATALFQAEIEFSLFCPPLLLTEQSKHRLFEHFWNSGGARVGEEGALGWSTWLEKEEETRQRVMNEELSRENEGGGWTGWSEPWSKDNEGIANVEHETMNDVVMEDIQDEEEYTEVEPEVDTEDLLKMLGIDMNDGDGGEVNDTLTWIKWSKEESSRDCDQWMPVRGKSGTTSPANEADKTDEDEQLLRVVLYEDVNEYLFSLSTTEARLSLLSQFIDFYGGKMSQLFCSNSPTRADNILSLEDLPDSMLEKLKCIHEVLTKQQNSLAGFSFEFLSGSLSRNADIMKFIRNAVLLCLTVFPRNYMLEEAVLISEELYVTKMNSSNGMITPCRSLAKSLLKSDRQDLLLCGVYARREATYGNIDHARKVFDMALLSVEALPVELQSNAPLLYFWYAEVELANNSANDRESSSRGIHILSCLGSGTKYNPFKSQASSLLLLRAHQGFKEKLRTVWSSWVRGIINDQSVALICSAALFEELTTGWDAGIEVLNQAFSMVLPERRSQGYQLEFLFNYYIKMLQRHQRQSSLMKVWESILHGLQIYPFSPELLKDVVEVGHYYTTSNKLRRILDDCSYKKPSVVLWLFALSYEIFKGGSHHRIRGLFEKALANDKLCSSVLLWRCYIMFEMEIAHDPSAARRAFFRAIHSCPWSKRLWLDGFLKLNSVLTAKELSDLQEVMRDKELNLRTDIYEILLQQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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