Report for Sequence Feature Glyma16g34430
Feature Type: gene_model
Chromosome: Gm16
Start: 37099394
stop: 37103648
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g34430
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G20230 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr1:7009570-7011852 FORWARD LENGTH=760
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF83 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_D7KIA6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KIA6_ARALL
SoyBase E_val: 0 ISS
UniRef100_UPI000233F1D1 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233F1D1 related cluster n=1 Tax=unknown RepID=UPI000233F1D1
SoyBase E_val: 0 ISS
Expression Patterns of Glyma16g34430
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma16g34430
Paralog Evidence Comments
Glyma09g29890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g34430 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g218400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g34430
Coding sequences of Glyma16g34430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g34430.1 sequence type=CDS gene model=Glyma16g34430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATTTAAGAATATACGGAATAAGACATAGTGACATACAGCAACAGCAGCAGCATTTCCTTCGTTCTGAGAATCGAGCAGCAACGTTAACAGTGAGTGTGGCGCGGCAAGCCCACGCCCTCATTCTCCGACTGAACCTCTTCTCCGACACCCAACTCACCACCAGCCTCCTCTCCTTCTACGCCAACGCTCTCTCCCTCTCCACCCCCCAACTCTCCCTCACCCTCTCCTCCCACCTCCCCCACCCCACCCTCTTCTCCTTCTCCTCCCTCATCCACGCCTTCGCCCGCTCCCACCACTTCCCCCACGTCCTCACCACCTTCTCCCACCTCCACCCTCTCCGCCTCATCCCCGACGCCTTCCTCCTCCCCTCCGCCATCAAGTCCTGCGCCTCCCTCCGCGCCCTCGACCCTGGCCAACAGCTCCACGCCTTCGCCGCCGCATCCGGCTTCCTCACTGATTCCATTGTGGCATCCTCCTTGACCCACATGTACCTCAAATGCGACCGCATTTTGGATGCCCGGAAACTGTTTGATAGAATGCCTGATAGGGATGTGGTTGTCTGGAGTGCCATGATTGCCGGGTACTCGCGGCTCGGCCTCGTGGAAGAGGCCAAGGAGCTCTTTGGGGAGATGAGGAGTGGTGGAGTGGAGCCCAATTTGGTGTCGTGGAATGGCATGCTTGCCGGGTTTGGGAACAACGGCTTTTACGATGAGGCCGTGGGGATGTTTCGGATGATGTTGGTGCAAGGGTTTTGGCCTGACGGGAGTACTGTTTCGTGTGTGCTTCCTGCTGTGGGGTGCTTGGAGGATGTGGTCGTGGGGGCTCAGGTTCATGGTTATGTCATCAAGCAAGGGCTGGGGTCTGACAAGTTTGTGGTTAGTGCCATGCTTGATATGTATGGGAAATGTGGCTGTGTGAAGGAGATGAGCCGGGTGTTTGATGAAGTGGAGGAAATGGAAATTGGGTCTTTGAATGCTTTTCTTACTGGGTTGTCACGGAATGGTATGGTTGACACCGCGTTGGAGGTGTTTAACAAGTTTAAGGACCAAAAAATGGAGTTGAATGTTGTGACGTGGACGTCAATAATAGCTAGCTGCTCGCAGAACGGGAAGGATTTGGAGGCTTTGGAGCTTTTTAGAGATATGCAGGCTTATGGGGTGGAGCCTAATGCTGTGACAATCCCGAGCTTGATTCCTGCTTGTGGGAATATCTCGGCATTGATGCACGGGAAGGAAATCCATTGCTTTTCTCTCAGAAGGGGGATTTTTGATGATGTATATGTAGGTAGTGCGTTGATAGACATGTATGCCAAGTGTGGGAGAATTCAGTTGGCCCGACGTTGTTTTGATAAGATGTCGGCCCTGAATTTGGTTTCTTGGAATGCTGTTATGAAAGGGTATGCAATGCATGGGAAGGCTAAGGAAACAATGGAAATGTTTCATATGATGCTGCAGAGTGGTCAGAAGCCTGATTTGGTTACATTTACATGTGTTTTATCAGCGTGCGCGCAAAACGGCCTGACTGAAGAAGGGTGGCGTTGTTATAATAGTATGTCCGAAGAACATGGCATTGAACCTAAAATGGAACATTATGCTTGCTTGGTGACACTTCTCAGTCGTGTTGGAAAACTTGAAGAGGCTTACTCTATCATTAAGGAAATGCCTTTTGAACCTGATGCTTGTGTATGGGGAGCCTTGCTAAGTTCTTGCAGAGTTCACAATAATTTGAGTTTAGGTGAGATTGCTGCGGAGAAGCTTTTCTTCTTAGAACCAACCAACCCTGGGAACTATATTCTTCTGTCCAATATCTATGCTTCAAAGGGCTTGTGGGATGAAGAAAATAGAATACGCGAAGTGATGAAAAGCAAGGGATTGAGGAAAAACCCTGGGTATAGTTGGATTGAAGTTGGACACAAAGTACACATGCTTCTTGCTGGTGACCAATCACATCCACAAATGAAAGATATTTTGGAGAAGTTGGATAAATTGAATATGCAGATGAAGAAGTCTGGTTACCTCCCTAAGACTAACTTTGTGTTGCAAGATGTGGAGGAACAGGATAAGGAGCAGATATTGTGTGGGCACAGTGAGAAGTTGGCAGTAGTATTAGGACTACTCAACACAAGTCCAGGACAACCTCTTCAAGTGATTAAGAACCTGAGAATCTGTGATGACTGCCATGCTGTGATTAAAGTAATAAGCAGATTGGAAGGAAGAGAAATTTATGTAAGAGACACAAATCGTTTTCACCATTTCAAAGACGGTGTTTGTTCTTGTGGAGATTTTTGGTAA
Predicted protein sequences of Glyma16g34430
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g34430.1 sequence type=predicted peptide gene model=Glyma16g34430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNLRIYGIRHSDIQQQQQHFLRSENRAATLTVSVARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
