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Report for Sequence Feature Glyma16g34220
Feature Type: gene_model
Chromosome: Gm16
Start: 36856936
stop: 36861082
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g34220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G73220 AT
Annotation by Michelle Graham. TAIR10: organic cation/carnitine transporter1 | chr1:27538387-27540109 FORWARD LENGTH=539
SoyBase E_val: 0 ISS
GO:0010150 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf senescence
SoyBase N/A ISS
GO:0015706 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate transport
SoyBase N/A ISS
GO:0016036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation
SoyBase N/A ISS
GO:0019375 GO-bp
Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0015144 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity
SoyBase N/A ISS
GO:0015226 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carnitine transmembrane transporter activity
SoyBase N/A ISS
GO:0022857 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity
SoyBase N/A ISS
KOG0255
KOG
Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)
JGI ISS
PTHR24064 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24064:SF40 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00083 PFAM
Sugar (and other) transporter
JGI ISS
UniRef100_D7KR84 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Sugar transporter family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KR84_ARALL
SoyBase E_val: 0 ISS
UniRef100_I1MQK5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQK5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma16g34220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma16g34220
Paralog Evidence Comments
Glyma09g29640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g34220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g216500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g34220
Transcripts of Glyma16g34220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g34220.2 sequence type=transcript gene model=Glyma16g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAAAAGAGAGAGAGATGGAATATCCCTTGGGACAAGTAACAAGTTACCCGAACAATTTAAATATGTACGTACTGAGGTGGGTTTGTTTCATGGCCAAGATTTCAGCATTTTTTCAGTATCTTGAGATAAGCAAGCCAAATCTTTAGCTCTTCTGAACCAACTTTCATATAACAACCTTGCAGCAGTCATTTGATTCAAAAGGAATCATAATGGAAGAGGAGCAAAAACTGGTTAAAGGGACCACAAATTTGGAGGGAAGTGAAAGTGAGGCCAAACTTGAGCTCACAGTGGATGAAGTGGTGGAGGAGTATGTGGGGTCCTTAGGGTTCTCTCAGATGGTGCATGTGTTCTTGGTGTCATTGGCATGGATATTTGATGCTCAGAGTACTTTGGCCACAATCTTCAGTGATGCTCAACCACCTGCTTGGAGGTGCAAAACTGGATTGTGTCATGGTAACAACAATAGCACTGGGTCTGTCTGTGGGTTGGTGCCTGGTACTTGGGAATGGGTTGGTGGCAACACAAGTTCCATCATAGCTGAGTGGAATCTTGTATGTGATAGAAGGTTTCTGGCTGCTGTTCCTGCTTCTGTCTACTTCCTTGGCTCGCTCATAGGTTCTGGTGTCTATGGCCACCTCTCTGATTCATGGCTAGGCAGAAAAAAAACAGTGCAACTTTCCTGCATCTTAACCTCCATAACAGCCTTTGCCACATCTCTCTCTCCAAACATTTGGACCTATGTCTTCTTCCGTTTTGCCAATGGCTTTACAAGGTCAGGAATTGGCATATGCTGCCTTGTCCTAACCACAGAATCAGTAGGTCGCAAGTGGCGTGGCCAAGTTGGCCAATACGGCTTCTTTTTCTTCACAATAGGGTTCCTCACACTCCCCCTTGTGGCCTATCCAACAAGAACATGTTGGAGAAACTTGTACAAACTCTTGTCACTTCTTCCCCTAGCATATTCTCTCCTATTACTCCCTTTGGTCTCAGAGTCCCCACGTTGGCTTCTAATAAGAGGCAGAGACAAAGAAGCCCTTCAAGTTTTGGACAGATTTGCTAGGCTCAATGGCAAGAAAAAACTCCCCAATAACCTCACTTTGGTTAACCCTTGTGGATCATCATGTGATGAAACAAGTCCTAATAACAACAAAGAGAACCTTTGGACCACAAAATGGGCAGCTATTAGGATGGTCACTGTTATGTTAGCTGGCTTTGGAGTTGGTTTTGTTTACTATGGAGTTCAACTCAATGTTGAAAACTTGAACTTCAACCTCTATGTCTCAGTGGCAATCAATGCACTTATGGAGATTCCTGCTGTGGTGATTGGTACCTTTCTATTGGGATTTACTAATAGACGTTTGTTGTTATCTGTGTCCTCTTATATAGCTGCAGTGTCCTCTATATTATGCACATTTTTTTCACACAAAGGAGGCACATCAAAAGTGCATAACAACAATAGTTATGGTGGTAACTGGGGTCAATTGATTATTGAGGCAATTGGATTCATGGGTGCTTCCACAGCATTTGACATTTTGTACATCTATTGTGTGGAGCTTTTTCCTACTAATGTTAGGAACTTTGCTGTGTCAATGCTGCGCCAGGCCATTATGTTGGGGGCTTCTGTGGCACCTTTACTTGTTGTCTTGGGCCGTTTGAGCCCATCTCTCTCTTTCCTAGTGTTTGGTGTCTTTGCAATTTCAAGTGGTGTTTTGAGCATTTGGCTACCTGAGACTAGAAATGCTCCTCTCTATGAGACCCTGAAGCAGCAAGAGGAGGAGGAGAAACACAGTTGGATGTCTCAAAATGATTGTGCCCTAGAGATGGGAAAATAACTCAAAATGGTCTTCATTTTAATTTATATGCACTACTAATCTAAAATGTTTTTGTGTAGACATTTGATAAGATTTAACCATTTTGCCATGTCATATGATGGGATGATAAGCTAAATTCTTATTGGGTGTGTGTACAAATATTTTAGATTGAGAATGTGTGTAAATTAAACTCTAATAGAAGTAGGGTAATGTGACCCAAAGGGAATGGAATTAGGGGAAATCAAAATTATCATGTTGGAATGACCACATGTTGCTTCCTAATGTAATAGATTGATGATTATCATAACGATAACATCTGATTAGTAATGTATCCTTACTTCTTGTGCTGTCAAAGAGGCAGAATATAAGACTGTCCATGTGCCATATCAAGTGCAGAGTCATGACTCATGAGATATGTTTGAGTATTGTCATCCTTATATTTATATTTTTATATCGTTTAGTTAACTATATCAATAAAAATTACACATCCATACTCCG
Coding sequences of Glyma16g34220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g34220.1 sequence type=CDS gene model=Glyma16g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGAGGAGCAAAAACTGGTTAAAGGGACCACAAATTTGGAGGGAAGTGAAAGTGAGGCCAAACTTGAGCTCACAGTGGATGAAGTGGTGGAGGAGTATGTGGGGTCCTTAGGGTTCTCTCAGATGGTGCATGTGTTCTTGGTGTCATTGGCATGGATATTTGATGCTCAGAGTACTTTGGCCACAATCTTCAGTGATGCTCAACCACCTGCTTGGAGGTGCAAAACTGGATTGTGTCATGGTAACAACAATAGCACTGGGTCTGTCTGTGGGTTGGTGCCTGGTACTTGGGAATGGGTTGGTGGCAACACAAGTTCCATCATAGCTGAGTGGAATCTTGTATGTGATAGAAGGTTTCTGGCTGCTGTTCCTGCTTCTGTCTACTTCCTTGGCTCGCTCATAGGTTCTGGTGTCTATGGCCACCTCTCTGATTCATGGCTAGGCAGAAAAAAAACAGTGCAACTTTCCTGCATCTTAACCTCCATAACAGCCTTTGCCACATCTCTCTCTCCAAACATTTGGACCTATGTCTTCTTCCGTTTTGCCAATGGCTTTACAAGGTCAGGAATTGGCATATGCTGCCTTGTCCTAACCACAGAATCAGTAGGTCGCAAGTGGCGTGGCCAAGTTGGCCAATACGGCTTCTTTTTCTTCACAATAGGGTTCCTCACACTCCCCCTTGTGGCCTATCCAACAAGAACATGTTGGAGAAACTTGTACAAACTCTTGTCACTTCTTCCCCTAGCATATTCTCTCCTATTACTCCCTTTGGTCTCAGAGTCCCCACGTTGGCTTCTAATAAGAGGCAGAGACAAAGAAGCCCTTCAAGTTTTGGACAGATTTGCTAGGCTCAATGGCAAGAAAAAACTCCCCAATAACCTCACTTTGGTTAACCCTTGTGGATCATCATGTGATGAAACAAGTCCTAATAACAACAAAGAGAACCTTTGGACCACAAAATGGGCAGCTATTAGGATGGTCACTGTTATGTTAGCTGGCTTTGGAGTTGGTTTTGTTTACTATGGAGTTCAACTCAATGTTGAAAACTTGAACTTCAACCTCTATGTCTCAGTGGCAATCAATGCACTTATGGAGATTCCTGCTGTGGTGATTGGTACCTTTCTATTGGGATTTACTAATAGACGTTTGTTGTTATCTGTGTCCTCTTATATAGCTGCAGTGTCCTCTATATTATGCACATTTTTTTCACACAAAGGAGGCACATCAAAAGTGCATAACAACAATAGTTATGGTGGTAACTGGGGTCAATTGATTATTGAGGCAATTGGATTCATGGGTGCTTCCACAGCATTTGACATTTTGTACATCTATTGTGTGGAGCTTTTTCCTACTAATGTTAGGAACTTTGCTGTGTCAATGCTGCGCCAGGCCATTATGTTGGGGGCTTCTGTGGCACCTTTACTTGTTGTCTTGGGCCGTTTGAGCCCATCTCTCTCTTTCCTAGTGTTTGGTGTCTTTGCAATTTCAAGTGGTGTTTTGAGCATTTGGCTACCTGAGACTAGAAATGCTCCTCTCTATGAGACCCTGAAGCAGCAAGAGGAGGAGGAGAAACACAGTTGGATGTCTCAAAATGATTGTGCCCTAGAGATGGGAAAATAA
>Glyma16g34220.2 sequence type=CDS gene model=Glyma16g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGAGGAGCAAAAACTGGTTAAAGGGACCACAAATTTGGAGGGAAGTGAAAGTGAGGCCAAACTTGAGCTCACAGTGGATGAAGTGGTGGAGGAGTATGTGGGGTCCTTAGGGTTCTCTCAGATGGTGCATGTGTTCTTGGTGTCATTGGCATGGATATTTGATGCTCAGAGTACTTTGGCCACAATCTTCAGTGATGCTCAACCACCTGCTTGGAGGTGCAAAACTGGATTGTGTCATGGTAACAACAATAGCACTGGGTCTGTCTGTGGGTTGGTGCCTGGTACTTGGGAATGGGTTGGTGGCAACACAAGTTCCATCATAGCTGAGTGGAATCTTGTATGTGATAGAAGGTTTCTGGCTGCTGTTCCTGCTTCTGTCTACTTCCTTGGCTCGCTCATAGGTTCTGGTGTCTATGGCCACCTCTCTGATTCATGGCTAGGCAGAAAAAAAACAGTGCAACTTTCCTGCATCTTAACCTCCATAACAGCCTTTGCCACATCTCTCTCTCCAAACATTTGGACCTATGTCTTCTTCCGTTTTGCCAATGGCTTTACAAGGTCAGGAATTGGCATATGCTGCCTTGTCCTAACCACAGAATCAGTAGGTCGCAAGTGGCGTGGCCAAGTTGGCCAATACGGCTTCTTTTTCTTCACAATAGGGTTCCTCACACTCCCCCTTGTGGCCTATCCAACAAGAACATGTTGGAGAAACTTGTACAAACTCTTGTCACTTCTTCCCCTAGCATATTCTCTCCTATTACTCCCTTTGGTCTCAGAGTCCCCACGTTGGCTTCTAATAAGAGGCAGAGACAAAGAAGCCCTTCAAGTTTTGGACAGATTTGCTAGGCTCAATGGCAAGAAAAAACTCCCCAATAACCTCACTTTGGTTAACCCTTGTGGATCATCATGTGATGAAACAAGTCCTAATAACAACAAAGAGAACCTTTGGACCACAAAATGGGCAGCTATTAGGATGGTCACTGTTATGTTAGCTGGCTTTGGAGTTGGTTTTGTTTACTATGGAGTTCAACTCAATGTTGAAAACTTGAACTTCAACCTCTATGTCTCAGTGGCAATCAATGCACTTATGGAGATTCCTGCTGTGGTGATTGGTACCTTTCTATTGGGATTTACTAATAGACGTTTGTTGTTATCTGTGTCCTCTTATATAGCTGCAGTGTCCTCTATATTATGCACATTTTTTTCACACAAAGGAGGCACATCAAAAGTGCATAACAACAATAGTTATGGTGGTAACTGGGGTCAATTGATTATTGAGGCAATTGGATTCATGGGTGCTTCCACAGCATTTGACATTTTGTACATCTATTGTGTGGAGCTTTTTCCTACTAATGTTAGGAACTTTGCTGTGTCAATGCTGCGCCAGGCCATTATGTTGGGGGCTTCTGTGGCACCTTTACTTGTTGTCTTGGGCCGTTTGAGCCCATCTCTCTCTTTCCTAGTGTTTGGTGTCTTTGCAATTTCAAGTGGTGTTTTGAGCATTTGGCTACCTGAGACTAGAAATGCTCCTCTCTATGAGACCCTGAAGCAGCAAGAGGAGGAGGAGAAACACAGTTGGATGTCTCAAAATGATTGTGCCCTAGAGATGGGAAAATAA
Predicted protein sequences of Glyma16g34220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g34220.1 sequence type=predicted peptide gene model=Glyma16g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEEEQKLVKGTTNLEGSESEAKLELTVDEVVEEYVGSLGFSQMVHVFLVSLAWIFDAQSTLATIFSDAQPPAWRCKTGLCHGNNNSTGSVCGLVPGTWEWVGGNTSSIIAEWNLVCDRRFLAAVPASVYFLGSLIGSGVYGHLSDSWLGRKKTVQLSCILTSITAFATSLSPNIWTYVFFRFANGFTRSGIGICCLVLTTESVGRKWRGQVGQYGFFFFTIGFLTLPLVAYPTRTCWRNLYKLLSLLPLAYSLLLLPLVSESPRWLLIRGRDKEALQVLDRFARLNGKKKLPNNLTLVNPCGSSCDETSPNNNKENLWTTKWAAIRMVTVMLAGFGVGFVYYGVQLNVENLNFNLYVSVAINALMEIPAVVIGTFLLGFTNRRLLLSVSSYIAAVSSILCTFFSHKGGTSKVHNNNSYGGNWGQLIIEAIGFMGASTAFDILYIYCVELFPTNVRNFAVSMLRQAIMLGASVAPLLVVLGRLSPSLSFLVFGVFAISSGVLSIWLPETRNAPLYETLKQQEEEEKHSWMSQNDCALEMGK*
>Glyma16g34220.2 sequence type=predicted peptide gene model=Glyma16g34220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEEEQKLVKGTTNLEGSESEAKLELTVDEVVEEYVGSLGFSQMVHVFLVSLAWIFDAQSTLATIFSDAQPPAWRCKTGLCHGNNNSTGSVCGLVPGTWEWVGGNTSSIIAEWNLVCDRRFLAAVPASVYFLGSLIGSGVYGHLSDSWLGRKKTVQLSCILTSITAFATSLSPNIWTYVFFRFANGFTRSGIGICCLVLTTESVGRKWRGQVGQYGFFFFTIGFLTLPLVAYPTRTCWRNLYKLLSLLPLAYSLLLLPLVSESPRWLLIRGRDKEALQVLDRFARLNGKKKLPNNLTLVNPCGSSCDETSPNNNKENLWTTKWAAIRMVTVMLAGFGVGFVYYGVQLNVENLNFNLYVSVAINALMEIPAVVIGTFLLGFTNRRLLLSVSSYIAAVSSILCTFFSHKGGTSKVHNNNSYGGNWGQLIIEAIGFMGASTAFDILYIYCVELFPTNVRNFAVSMLRQAIMLGASVAPLLVVLGRLSPSLSFLVFGVFAISSGVLSIWLPETRNAPLYETLKQQEEEEKHSWMSQNDCALEMGK*