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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma16g34220

Feature Type:gene_model
Chromosome:Gm16
Start:36856936
stop:36861082
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73220AT Annotation by Michelle Graham. TAIR10: organic cation/carnitine transporter1 | chr1:27538387-27540109 FORWARD LENGTH=539 SoyBaseE_val: 0ISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0019375GO-bp Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0015144GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity SoyBaseN/AISS
GO:0015226GO-mf Annotation by Michelle Graham. GO Molecular Function: carnitine transmembrane transporter activity SoyBaseN/AISS
GO:0022857GO-mf Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity SoyBaseN/AISS
KOG0255 KOG Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) JGI ISS
PTHR24064Panther FAMILY NOT NAMED JGI ISS
PTHR24064:SF40Panther SUBFAMILY NOT NAMED JGI ISS
PF00083PFAM Sugar (and other) transporter JGI ISS
UniRef100_D7KR84UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sugar transporter family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KR84_ARALL SoyBaseE_val: 0ISS
UniRef100_I1MQK5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQK5_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g34220 not represented in the dataset

Glyma16g34220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g29640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g216500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g34220.2   sequence type=transcript   gene model=Glyma16g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAGAGAGAGAGATGGAATATCCCTTGGGACAAGTAACAAGTTACCCGAACAATTTAAATATGTACGTACTGAGGTGGGTTTGTTTCATGGCCAAGATTTCAGCATTTTTTCAGTATCTTGAGATAAGCAAGCCAAATCTTTAGCTCTTCTGAACCAACTTTCATATAACAACCTTGCAGCAGTCATTTGATTCAAAAGGAATCATAATGGAAGAGGAGCAAAAACTGGTTAAAGGGACCACAAATTTGGAGGGAAGTGAAAGTGAGGCCAAACTTGAGCTCACAGTGGATGAAGTGGTGGAGGAGTATGTGGGGTCCTTAGGGTTCTCTCAGATGGTGCATGTGTTCTTGGTGTCATTGGCATGGATATTTGATGCTCAGAGTACTTTGGCCACAATCTTCAGTGATGCTCAACCACCTGCTTGGAGGTGCAAAACTGGATTGTGTCATGGTAACAACAATAGCACTGGGTCTGTCTGTGGGTTGGTGCCTGGTACTTGGGAATGGGTTGGTGGCAACACAAGTTCCATCATAGCTGAGTGGAATCTTGTATGTGATAGAAGGTTTCTGGCTGCTGTTCCTGCTTCTGTCTACTTCCTTGGCTCGCTCATAGGTTCTGGTGTCTATGGCCACCTCTCTGATTCATGGCTAGGCAGAAAAAAAACAGTGCAACTTTCCTGCATCTTAACCTCCATAACAGCCTTTGCCACATCTCTCTCTCCAAACATTTGGACCTATGTCTTCTTCCGTTTTGCCAATGGCTTTACAAGGTCAGGAATTGGCATATGCTGCCTTGTCCTAACCACAGAATCAGTAGGTCGCAAGTGGCGTGGCCAAGTTGGCCAATACGGCTTCTTTTTCTTCACAATAGGGTTCCTCACACTCCCCCTTGTGGCCTATCCAACAAGAACATGTTGGAGAAACTTGTACAAACTCTTGTCACTTCTTCCCCTAGCATATTCTCTCCTATTACTCCCTTTGGTCTCAGAGTCCCCACGTTGGCTTCTAATAAGAGGCAGAGACAAAGAAGCCCTTCAAGTTTTGGACAGATTTGCTAGGCTCAATGGCAAGAAAAAACTCCCCAATAACCTCACTTTGGTTAACCCTTGTGGATCATCATGTGATGAAACAAGTCCTAATAACAACAAAGAGAACCTTTGGACCACAAAATGGGCAGCTATTAGGATGGTCACTGTTATGTTAGCTGGCTTTGGAGTTGGTTTTGTTTACTATGGAGTTCAACTCAATGTTGAAAACTTGAACTTCAACCTCTATGTCTCAGTGGCAATCAATGCACTTATGGAGATTCCTGCTGTGGTGATTGGTACCTTTCTATTGGGATTTACTAATAGACGTTTGTTGTTATCTGTGTCCTCTTATATAGCTGCAGTGTCCTCTATATTATGCACATTTTTTTCACACAAAGGAGGCACATCAAAAGTGCATAACAACAATAGTTATGGTGGTAACTGGGGTCAATTGATTATTGAGGCAATTGGATTCATGGGTGCTTCCACAGCATTTGACATTTTGTACATCTATTGTGTGGAGCTTTTTCCTACTAATGTTAGGAACTTTGCTGTGTCAATGCTGCGCCAGGCCATTATGTTGGGGGCTTCTGTGGCACCTTTACTTGTTGTCTTGGGCCGTTTGAGCCCATCTCTCTCTTTCCTAGTGTTTGGTGTCTTTGCAATTTCAAGTGGTGTTTTGAGCATTTGGCTACCTGAGACTAGAAATGCTCCTCTCTATGAGACCCTGAAGCAGCAAGAGGAGGAGGAGAAACACAGTTGGATGTCTCAAAATGATTGTGCCCTAGAGATGGGAAAATAACTCAAAATGGTCTTCATTTTAATTTATATGCACTACTAATCTAAAATGTTTTTGTGTAGACATTTGATAAGATTTAACCATTTTGCCATGTCATATGATGGGATGATAAGCTAAATTCTTATTGGGTGTGTGTACAAATATTTTAGATTGAGAATGTGTGTAAATTAAACTCTAATAGAAGTAGGGTAATGTGACCCAAAGGGAATGGAATTAGGGGAAATCAAAATTATCATGTTGGAATGACCACATGTTGCTTCCTAATGTAATAGATTGATGATTATCATAACGATAACATCTGATTAGTAATGTATCCTTACTTCTTGTGCTGTCAAAGAGGCAGAATATAAGACTGTCCATGTGCCATATCAAGTGCAGAGTCATGACTCATGAGATATGTTTGAGTATTGTCATCCTTATATTTATATTTTTATATCGTTTAGTTAACTATATCAATAAAAATTACACATCCATACTCCG

>Glyma16g34220.1   sequence type=CDS   gene model=Glyma16g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGAGCAAAAACTGGTTAAAGGGACCACAAATTTGGAGGGAAGTGAAAGTGAGGCCAAACTTGAGCTCACAGTGGATGAAGTGGTGGAGGAGTATGTGGGGTCCTTAGGGTTCTCTCAGATGGTGCATGTGTTCTTGGTGTCATTGGCATGGATATTTGATGCTCAGAGTACTTTGGCCACAATCTTCAGTGATGCTCAACCACCTGCTTGGAGGTGCAAAACTGGATTGTGTCATGGTAACAACAATAGCACTGGGTCTGTCTGTGGGTTGGTGCCTGGTACTTGGGAATGGGTTGGTGGCAACACAAGTTCCATCATAGCTGAGTGGAATCTTGTATGTGATAGAAGGTTTCTGGCTGCTGTTCCTGCTTCTGTCTACTTCCTTGGCTCGCTCATAGGTTCTGGTGTCTATGGCCACCTCTCTGATTCATGGCTAGGCAGAAAAAAAACAGTGCAACTTTCCTGCATCTTAACCTCCATAACAGCCTTTGCCACATCTCTCTCTCCAAACATTTGGACCTATGTCTTCTTCCGTTTTGCCAATGGCTTTACAAGGTCAGGAATTGGCATATGCTGCCTTGTCCTAACCACAGAATCAGTAGGTCGCAAGTGGCGTGGCCAAGTTGGCCAATACGGCTTCTTTTTCTTCACAATAGGGTTCCTCACACTCCCCCTTGTGGCCTATCCAACAAGAACATGTTGGAGAAACTTGTACAAACTCTTGTCACTTCTTCCCCTAGCATATTCTCTCCTATTACTCCCTTTGGTCTCAGAGTCCCCACGTTGGCTTCTAATAAGAGGCAGAGACAAAGAAGCCCTTCAAGTTTTGGACAGATTTGCTAGGCTCAATGGCAAGAAAAAACTCCCCAATAACCTCACTTTGGTTAACCCTTGTGGATCATCATGTGATGAAACAAGTCCTAATAACAACAAAGAGAACCTTTGGACCACAAAATGGGCAGCTATTAGGATGGTCACTGTTATGTTAGCTGGCTTTGGAGTTGGTTTTGTTTACTATGGAGTTCAACTCAATGTTGAAAACTTGAACTTCAACCTCTATGTCTCAGTGGCAATCAATGCACTTATGGAGATTCCTGCTGTGGTGATTGGTACCTTTCTATTGGGATTTACTAATAGACGTTTGTTGTTATCTGTGTCCTCTTATATAGCTGCAGTGTCCTCTATATTATGCACATTTTTTTCACACAAAGGAGGCACATCAAAAGTGCATAACAACAATAGTTATGGTGGTAACTGGGGTCAATTGATTATTGAGGCAATTGGATTCATGGGTGCTTCCACAGCATTTGACATTTTGTACATCTATTGTGTGGAGCTTTTTCCTACTAATGTTAGGAACTTTGCTGTGTCAATGCTGCGCCAGGCCATTATGTTGGGGGCTTCTGTGGCACCTTTACTTGTTGTCTTGGGCCGTTTGAGCCCATCTCTCTCTTTCCTAGTGTTTGGTGTCTTTGCAATTTCAAGTGGTGTTTTGAGCATTTGGCTACCTGAGACTAGAAATGCTCCTCTCTATGAGACCCTGAAGCAGCAAGAGGAGGAGGAGAAACACAGTTGGATGTCTCAAAATGATTGTGCCCTAGAGATGGGAAAATAA

>Glyma16g34220.2   sequence type=CDS   gene model=Glyma16g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGGAGCAAAAACTGGTTAAAGGGACCACAAATTTGGAGGGAAGTGAAAGTGAGGCCAAACTTGAGCTCACAGTGGATGAAGTGGTGGAGGAGTATGTGGGGTCCTTAGGGTTCTCTCAGATGGTGCATGTGTTCTTGGTGTCATTGGCATGGATATTTGATGCTCAGAGTACTTTGGCCACAATCTTCAGTGATGCTCAACCACCTGCTTGGAGGTGCAAAACTGGATTGTGTCATGGTAACAACAATAGCACTGGGTCTGTCTGTGGGTTGGTGCCTGGTACTTGGGAATGGGTTGGTGGCAACACAAGTTCCATCATAGCTGAGTGGAATCTTGTATGTGATAGAAGGTTTCTGGCTGCTGTTCCTGCTTCTGTCTACTTCCTTGGCTCGCTCATAGGTTCTGGTGTCTATGGCCACCTCTCTGATTCATGGCTAGGCAGAAAAAAAACAGTGCAACTTTCCTGCATCTTAACCTCCATAACAGCCTTTGCCACATCTCTCTCTCCAAACATTTGGACCTATGTCTTCTTCCGTTTTGCCAATGGCTTTACAAGGTCAGGAATTGGCATATGCTGCCTTGTCCTAACCACAGAATCAGTAGGTCGCAAGTGGCGTGGCCAAGTTGGCCAATACGGCTTCTTTTTCTTCACAATAGGGTTCCTCACACTCCCCCTTGTGGCCTATCCAACAAGAACATGTTGGAGAAACTTGTACAAACTCTTGTCACTTCTTCCCCTAGCATATTCTCTCCTATTACTCCCTTTGGTCTCAGAGTCCCCACGTTGGCTTCTAATAAGAGGCAGAGACAAAGAAGCCCTTCAAGTTTTGGACAGATTTGCTAGGCTCAATGGCAAGAAAAAACTCCCCAATAACCTCACTTTGGTTAACCCTTGTGGATCATCATGTGATGAAACAAGTCCTAATAACAACAAAGAGAACCTTTGGACCACAAAATGGGCAGCTATTAGGATGGTCACTGTTATGTTAGCTGGCTTTGGAGTTGGTTTTGTTTACTATGGAGTTCAACTCAATGTTGAAAACTTGAACTTCAACCTCTATGTCTCAGTGGCAATCAATGCACTTATGGAGATTCCTGCTGTGGTGATTGGTACCTTTCTATTGGGATTTACTAATAGACGTTTGTTGTTATCTGTGTCCTCTTATATAGCTGCAGTGTCCTCTATATTATGCACATTTTTTTCACACAAAGGAGGCACATCAAAAGTGCATAACAACAATAGTTATGGTGGTAACTGGGGTCAATTGATTATTGAGGCAATTGGATTCATGGGTGCTTCCACAGCATTTGACATTTTGTACATCTATTGTGTGGAGCTTTTTCCTACTAATGTTAGGAACTTTGCTGTGTCAATGCTGCGCCAGGCCATTATGTTGGGGGCTTCTGTGGCACCTTTACTTGTTGTCTTGGGCCGTTTGAGCCCATCTCTCTCTTTCCTAGTGTTTGGTGTCTTTGCAATTTCAAGTGGTGTTTTGAGCATTTGGCTACCTGAGACTAGAAATGCTCCTCTCTATGAGACCCTGAAGCAGCAAGAGGAGGAGGAGAAACACAGTTGGATGTCTCAAAATGATTGTGCCCTAGAGATGGGAAAATAA

>Glyma16g34220.1   sequence type=predicted peptide   gene model=Glyma16g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEQKLVKGTTNLEGSESEAKLELTVDEVVEEYVGSLGFSQMVHVFLVSLAWIFDAQSTLATIFSDAQPPAWRCKTGLCHGNNNSTGSVCGLVPGTWEWVGGNTSSIIAEWNLVCDRRFLAAVPASVYFLGSLIGSGVYGHLSDSWLGRKKTVQLSCILTSITAFATSLSPNIWTYVFFRFANGFTRSGIGICCLVLTTESVGRKWRGQVGQYGFFFFTIGFLTLPLVAYPTRTCWRNLYKLLSLLPLAYSLLLLPLVSESPRWLLIRGRDKEALQVLDRFARLNGKKKLPNNLTLVNPCGSSCDETSPNNNKENLWTTKWAAIRMVTVMLAGFGVGFVYYGVQLNVENLNFNLYVSVAINALMEIPAVVIGTFLLGFTNRRLLLSVSSYIAAVSSILCTFFSHKGGTSKVHNNNSYGGNWGQLIIEAIGFMGASTAFDILYIYCVELFPTNVRNFAVSMLRQAIMLGASVAPLLVVLGRLSPSLSFLVFGVFAISSGVLSIWLPETRNAPLYETLKQQEEEEKHSWMSQNDCALEMGK*

>Glyma16g34220.2   sequence type=predicted peptide   gene model=Glyma16g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEQKLVKGTTNLEGSESEAKLELTVDEVVEEYVGSLGFSQMVHVFLVSLAWIFDAQSTLATIFSDAQPPAWRCKTGLCHGNNNSTGSVCGLVPGTWEWVGGNTSSIIAEWNLVCDRRFLAAVPASVYFLGSLIGSGVYGHLSDSWLGRKKTVQLSCILTSITAFATSLSPNIWTYVFFRFANGFTRSGIGICCLVLTTESVGRKWRGQVGQYGFFFFTIGFLTLPLVAYPTRTCWRNLYKLLSLLPLAYSLLLLPLVSESPRWLLIRGRDKEALQVLDRFARLNGKKKLPNNLTLVNPCGSSCDETSPNNNKENLWTTKWAAIRMVTVMLAGFGVGFVYYGVQLNVENLNFNLYVSVAINALMEIPAVVIGTFLLGFTNRRLLLSVSSYIAAVSSILCTFFSHKGGTSKVHNNNSYGGNWGQLIIEAIGFMGASTAFDILYIYCVELFPTNVRNFAVSMLRQAIMLGASVAPLLVVLGRLSPSLSFLVFGVFAISSGVLSIWLPETRNAPLYETLKQQEEEEKHSWMSQNDCALEMGK*







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