Glyma16g34131 - SoyBase

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Report for Sequence Feature Glyma16g34131

Feature Type:	gene_model
Chromosome:	Gm16
Start:	36799160
stop:	36803386
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g34131

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17660	AT	Annotation by Michelle Graham. TAIR10: ARF-GAP domain 15 \| chr3:6037717-6039092 FORWARD LENGTH=232	SoyBase	E_val: 4.00E-81	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0703	KOG	Predicted GTPase-activating protein	JGI		ISS
PTHR23180	Panther	CENTAURIN/ARF	JGI		ISS
PTHR23180:SF31	Panther	ARF-LIKE	JGI		ISS
PF01412	PFAM	Putative GTPase activating protein for Arf	JGI		ISS
UniRef100_G7KLP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein AGD4 n=1 Tax=Medicago truncatula RepID=G7KLP2_MEDTR	SoyBase	E_val: 6.00E-122	ISS
UniRef100_I1MQJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQJ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g34131

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g34131 not represented in the dataset	Glyma16g34131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g34131

Paralog	Evidence	Comments
Glyma09g29553	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g34131 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g215600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g34131

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g34131

Limit To All Plant Sequences

>Glyma16g34131.2   sequence type=transcript   gene model=Glyma16g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAACAAACCAACGAACAAGTTGAAAACTGAAGACCCTCTTTTGAACCATATTTTCTCCACCCACTTACTTTCTCTGTTTGCTCTTCCTTCGCTGTGACTCAACCACGAGCACGGTTAAGGTTTTGCAAACATGAGCGGAAAAGCCTCCGTCTCCAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTTATGCAATTAATTGGTAATGCAAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTTGAGAAATTCATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAGCCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATGAATCACCAGCTGCTAGGGCCAAGAGTGCCACTCAGAGGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACATGTGGCACAAATTCGGCCTCCAGTCACGAGATATCATGAGGGCTCCTCAGATTTTCAAAAGAATTCACCACCACCACCATTAAGGAAGCCATCTGCATCATTTGATTTTGACTACACTAGGGGAAAGAACAATGGTATTGTTGATCATTTTGACTTGTTTTCCATCCATGATGATAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGAGAAGGCTTATGAGGTGTATGTTTGAAGATTGTTGAGCTAGCCCTTCGCGTAGATGTCCCAACATTGTAGTTGCAGATGATCTTGCAATGTTGAATGAACTTTGAGCGGCACTGGTTTAGGGACAAAGATTTCAACCAACACACGTTGCTGCAGGATATAAATTTGGAGCACATCTGCACCGCTTTGGCGTTGATGTATCACACAGCCTGAGATTGTTCATAGAATGGTTTGATTTGCACTGTAGCTCCTATTACACCCATTGATTGAGATTAACAAAAGGGATTAAGGGAATTAAATTTCAGTGTCAATTAAAGATTCTGTGACTGATCAAGATGTTGTTATATGCCCCAGCCTAAGTTTTTGTTCTTTTTCTAGTGCACCCTTTTCTTTTATTCATCAGTCAAAACACAGAGAATCTTAACTTTCTTCAGTGGATTTTGAGTTGCTTAACAAAGGTTGACATGATCAGAAATTTTATCTTAAGCTTCTAATTGCTTGAACCAAATTGTATAGTTCAAAAGAATTGATGATATAATAAATGAAAGATAAAATCATAATATTTACGAACA

>Glyma16g34131.3   sequence type=transcript   gene model=Glyma16g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAACAAACCAACGAACAAGTTGAAAACTGAAGACCCTCTTTTGAACCATATTTTCTCCACCCACTTACTTTCTCTGTTTGCTCTTCCTTCGCTGTGACTCAACCACGAGCACGGTTAAGGTTTTGCAAACATGAGCGGAAAAGCCTCCGTCTCCAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTTATGCAATTAATTGGTAATGCAAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTTGAGAAATTCATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAGCCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATGAATCACCAGCTGCTAGGGCCAAGAGTGCCACTCAGAGGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACATGTGGCACAAATTCGGCCTCCAGTCACGAGATATCATGAGGGCTCCTCAGATTTTCAAAAGAATTCACCACCACCACCATTAAGGAAGCCATCTGCATCATTTGATTTTGACTACACTAGGGGAAAGAACAATGGTATTGTTGATCATTTTGACTTGTTTTCCATCCATGATGATAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGAGAAGGCTTATGAGGTGTATGTTTGAAGATTGTTGAGCTAGCCCTTCGCGTAGATGTCCCAACATTGTAGTTGCAGATGATCTTGCAATGTTGAATGAACTTTGAGCGGCACTGGTATGGTTTAGGGACAAAGATTTCAACCAACACACGTTGCTGCAGGATATAAATTTGGAGCACATCTGCACCGCTTTGGCGTTGATGTATCACACAGCCTGAGATTGTTCATAGAATGGTTTGATTTGCACTGTAGCTCCTATTACACCCATTGATTGAGATTAACAAAAGGGATTAAGGGAATTAAATTTCAGTGTCAATTAAAGATTCTGTGACTGATCAAGATGTTGTTATATGCCCCAGCCTAAGTTTTTGTTCTTTTTCTAGTGCACCCTTTTCTTTTATTCATCAGTCAAAACACAGAGAATCTTAACTTTCTTCAGTGGATTTTGAGTTGCTTAACAAAGGTTGACATGATCAGAAATTTTATCTTAAGCTTCTAATTGCTTGAACCAAATTGTATAGTTCAAAAGAATTGATGATATAATAAATGAAAGATAAAATCATAATATTTACGAACA

Coding sequences of Glyma16g34131

Limit To All Plant Sequences

>Glyma16g34131.1   sequence type=CDS   gene model=Glyma16g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGAAAAGCCTCCGTCTCCAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTTATGCAATTAATTGGTAATGCAAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTTGAGAAATTCATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAGCCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATGAATCACCAGCTGCTAGGGCCAAGAGTGCCACTCAGAGGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACATGTGGCACAAATTCGGCCTCCAGTCACGAGATATCATGAGGGCTCCTCAGATTTTCAAAAGAATTCACCACCACCACCATTAAGGAAGCCATCTGCATCATTTGATTTTGACTACACTAGGGGAAAGAACAATGGTATTGTTGATCATTTTGACTTGTTTTCCATCCATGATGATAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGA

>Glyma16g34131.2   sequence type=CDS   gene model=Glyma16g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGAAAAGCCTCCGTCTCCAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTTATGCAATTAATTGGTAATGCAAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTTGAGAAATTCATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAGCCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATGAATCACCAGCTGCTAGGGCCAAGAGTGCCACTCAGAGGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACATGTGGCACAAATTCGGCCTCCAGTCACGAGATATCATGAGGGCTCCTCAGATTTTCAAAAGAATTCACCACCACCACCATTAAGGAAGCCATCTGCATCATTTGATTTTGACTACACTAGGGGAAAGAACAATGGTATTGTTGATCATTTTGACTTGTTTTCCATCCATGATGATAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGA

>Glyma16g34131.3   sequence type=CDS   gene model=Glyma16g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGGAAAAGCCTCCGTCTCCAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTTATGCAATTAATTGGTAATGCAAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTTGAGAAATTCATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAGCCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATGAATCACCAGCTGCTAGGGCCAAGAGTGCCACTCAGAGGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACATGTGGCACAAATTCGGCCTCCAGTCACGAGATATCATGAGGGCTCCTCAGATTTTCAAAAGAATTCACCACCACCACCATTAAGGAAGCCATCTGCATCATTTGATTTTGACTACACTAGGGGAAAGAACAATGGTATTGTTGATCATTTTGACTTGTTTTCCATCCATGATGATAAACAGGATTTCTCAACTACACCTCCTAGCTGGACAACATTTGATTGA

Predicted protein sequences of Glyma16g34131

Limit To All Plant Sequences

>Glyma16g34131.1   sequence type=predicted peptide   gene model=Glyma16g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKASVSKELHAKHTKILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLIGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGLQPASKSAEIIFNSNESPAARAKSATQRNRRLSLEESILVKHVAQIRPPVTRYHEGSSDFQKNSPPPPLRKPSASFDFDYTRGKNNGIVDHFDLFSIHDDKQDFSTTPPSWTTFD*

>Glyma16g34131.2   sequence type=predicted peptide   gene model=Glyma16g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKASVSKELHAKHTKILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLIGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGLQPASKSAEIIFNSNESPAARAKSATQRNRRLSLEESILVKHVAQIRPPVTRYHEGSSDFQKNSPPPPLRKPSASFDFDYTRGKNNGIVDHFDLFSIHDDKQDFSTTPPSWTTFD*

>Glyma16g34131.3   sequence type=predicted peptide   gene model=Glyma16g34131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKASVSKELHAKHTKILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQLIGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGLQPASKSAEIIFNSNESPAARAKSATQRNRRLSLEESILVKHVAQIRPPVTRYHEGSSDFQKNSPPPPLRKPSASFDFDYTRGKNNGIVDHFDLFSIHDDKQDFSTTPPSWTTFD*

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