SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G26500 | AT | Annotation by Michelle Graham. TAIR10: chloroplast sulfur E | chr4:13382456-13383571 REVERSE LENGTH=371 | SoyBase | E_val: 2.00E-38 | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0008047 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| KOG2313 | KOG | Stress-induced protein UVI31+ | JGI | ISS | |
| PTHR12735 | Panther | BOLA-LIKE PROTEIN-RELATED | JGI | ISS | |
| PTHR12735:SF3 | Panther | BOLA-LIKE PROTEIN CGI-143 | JGI | ISS | |
| PF01722 | PFAM | BolA-like protein | JGI | ISS | |
| UniRef100_A6N0A8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Uv-induced protein uvi31 n=4 Tax=Oryza RepID=A6N0A8_ORYSI | SoyBase | E_val: 2.00E-47 | ISS |
| UniRef100_Q84ZV2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=Q84ZV2_SOYBN | SoyBase | E_val: 9.00E-69 | ISS |
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Glyma16g34010 not represented in the dataset |
Glyma16g34010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g29521 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.U035500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g34010.3 sequence type=transcript gene model=Glyma16g34010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTTGATCTGCGGAAACTCCTCTATTCTCAAAACCCTAAGCCGACATCACCATTCATCCGATGAGTTCGAGAGGAGCGACCGCGGTGCTATCTCGTGCCAGCAGGATTCGGTCGAAGCTGCAAACGGCGCTGGAAGCCACCGTTTTGGAGGTGGACGACGTGTCGTACCAGCACGCGGGCCACGCCGCCGTGAAGGGTAGTTCCGACAAAGAAACCCACTTCAACCTCAACATCGTCTCCCCCAAGTTCGAGGGCCAGAGCCTTGTCAAACGACACCGTCTCATCTACGACCTCCTCGCCGACGAGCTCCAGAGCGGCCTCCACGCCCTCTCCATCGTCGCCAAAACTCCCCACGAAACAAACCCTTCTAAGTGACTCCTTGGGAGTGTCAAAGTTCGAAGCTTTTCCGCTCTGAGTGCCGAAATCTTTGGTCTTCTTTTGTTTGGAACGTGTTTGCTCTGTGAATGGAACCCTAATCATCTTATGTGGCTGTGTGGTCCGTAGAATGATTGCTTTGTGCGGGGATCATTCAAAATCAGTCTAAATCGTGAACTCAGGTCTCAGCTCTCATGTTTTCTCTCACTTGATTGGGCTCAACTTTCTCACAAAACAGAGTCCACCTTCTGCCGTGTTGAAGTTGCCCCTCCCTCACTTTTTCTCTCACATGTCTCTTCTCCTGTGTTGAATTTGTGTCTCTCCCTTGGCTGTGTCGAAGTCACCTCTTCTGTCACACTTCACACCTTCCTCTGCCATTTGCAACAGGTTAAAGCTCCTTCCTCTGTCACAGCGACCCATTCAGCTCATCCACTCATGTGAGTCTAATTTTGGTCCATTATTTTCACTTTGGCTTATTAGTGATAAGCTCATTATTCACTTTTTGATCCATTCAGCACTAATGTAACTATAAATCTGATACCTTTCGGTCCATTTACACTCCTATCAACTCGTTCAGTGTAATTTTTATTATTCTAATACGTTTTATTTGTAATTATTCTGATGCATTTATAAATTATAATTTTATTATATAACTACAAATC
>Glyma16g34010.2 sequence type=CDS gene model=Glyma16g34010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCGAGAGGAGCGACCGCGGTGCTATCTCGTGCCAGCAGGATTCGGTCGAAGCTGCAAACGGCGCTGGAAGCCACCGTTTTGGAGGTGGACGACGTGTCGTACCAGCACGCGGGCCACGCCGCCGTGAAGGGTAGTTCCGACAAAGAAACCCACTTCAACCTCAACATCGTCTCCCCCAAGTTCGAGGGCCAGAGCCTTGTCAAACGACACCGTCTCATCTACGACCTCCTCGCCGACGAGCTCCAGAGCGGCCTCCACGCCCTCTCCATCGTCGCCAAAACTCCCCACGAAACAAACCCTTCTAAGTGA >Glyma16g34010.3 sequence type=CDS gene model=Glyma16g34010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCGAGAGGAGCGACCGCGGTGCTATCTCGTGCCAGCAGGATTCGGTCGAAGCTGCAAACGGCGCTGGAAGCCACCGTTTTGGAGGTGGACGACGTGTCGTACCAGCACGCGGGCCACGCCGCCGTGAAGGGTAGTTCCGACAAAGAAACCCACTTCAACCTCAACATCGTCTCCCCCAAGTTCGAGGGCCAGAGCCTTGTCAAACGACACCGTCTCATCTACGACCTCCTCGCCGACGAGCTCCAGAGCGGCCTCCACGCCCTCTCCATCGTCGCCAAAACTCCCCACGAAACAAACCCTTCTAAGTGA
>Glyma16g34010.2 sequence type=predicted peptide gene model=Glyma16g34010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSRGATAVLSRASRIRSKLQTALEATVLEVDDVSYQHAGHAAVKGSSDKETHFNLNIVSPKFEGQSLVKRHRLIYDLLADELQSGLHALSIVAKTPHETNPSK* >Glyma16g34010.3 sequence type=predicted peptide gene model=Glyma16g34010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSRGATAVLSRASRIRSKLQTALEATVLEVDDVSYQHAGHAAVKGSSDKETHFNLNIVSPKFEGQSLVKRHRLIYDLLADELQSGLHALSIVAKTPHETNPSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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