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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G48380 | AT | Annotation by Michelle Graham. TAIR10: root hair initiation protein root hairless 1 (RHL1) | chr1:17877637-17879203 REVERSE LENGTH=355 | SoyBase | E_val: 5.00E-98 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0048766 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair initiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| UniRef100_G7KKB7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-binding protein RHL1 n=1 Tax=Medicago truncatula RepID=G7KKB7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L3V3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L3V3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g33850 not represented in the dataset |
Glyma16g33850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g29420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g213000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g33850.3 sequence type=transcript gene model=Glyma16g33850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTATGCAATTCCATTATTGACCCCTTAAATTTTACCAACCGCGATTTACAGAGAACAGAGTCACTGCCCCCACCAAACAAAAAAGGCACCTTGTTCCCGCGTGCGAGCAAAACACAGAGCACTGAAGAAACTTGACTTCACTTTGACCCCTTAATGGCGCGAGGAGGGAAGGCGAAGAAGAAGGAAGAAGGGGAAGAAGAGGCCAATCTCACAAACCCAGAAACGATAGAGCGGAAGAGGTTGAAATCCTTGGCCATTTCCCACAACATTCTCTCTGAGACACCTGCACGGAGCTCCGTTCAGCTGAACCCTTCCTCCGTCGTGGCCAAGCACCACGGCAAAGACATCATCAAGAAGTCTCAGAGGAAGAGCAGCAGGTACCTCTTCTCCTTCCCCGGCTTAATTGCTCCCATCGCCGGTGGCAAGATCGGTGACCTCAAGGACTTGGGCACCAAAAACCCCGTTCTCTACCTCGATTTCCCCCAGGGTCAAATGAAGTTATTCGGGACCATTGTATATCCAAAGAACAGATACTTGACTCTACAGTTCCCTAAAGGTGGAAAGAGTGTAATGTGTGAGGATTATTTTGATAACATGATAGTATTTTCGGATGCATGGTGGATCGGGAGGAAAGAAGAAAACCCAGAAGAAGCCAAGCTGGAATTTCCTAAGGAATTGTATGAGGGACACCAATCTGAATATGACTTTAAAGGGGGTGCAGGTGCTGGTGCAGCTTCTGTAGTTAACCAAGGTGTTCCCAGAACCAAGATTCAACGTGTAGAGCAAGAGTCACCGAAGACACCCACTGAAGATGATTTGTCAGACAGTGAAATCAATTTAGAAGATACAAAGGAATTGGTTCCGGTCCGGCATTCAACAAGAACTGCAAAAAAATCATATAAATTTGCTGAAATTTCTTCCGGTGATGATTCTGGTGAAAACAGCCCTGACCTTTCTGATCATGAAGAGAAAGTGATACAGAAAAAAACTGTAGTTTTTGACCTCGATGATGAGGATGATGCACCAGTAGATCAACCTGCCAAGAAAAATAATGAGTCTGCTTCTCGATCAAAATGTAAGGAAGTGTCTCAATCTGCTTCAGCGAGTGCATCTACTGAAGTTAAGTCCAGTAATCGTGGTTCACTTGTTCAGGCTACTATATCCACATTATTCAAGAAAGTGGAAGAAAAGAAAACTCCAAGAAGTTCGAGGAAATCTCCATCTTCAAAACCTTCTGGCCAGAAGTCACAGCCTGCTGGTTCAAAAAGAAAGACTGATCTGGATGAAGGATCCAAAAAAAGGGCAAGAAAGACCAAGGACAAAGATCCTGGTAAAAAAATCAAGGCGAAAAGCAAGAAAGACAATGTTGAAGATGATGATGATGATGATGATGGTGATGACATTGAAGAATTTTCAAATGCTTCGGAGGATACTAATGAAAGTGATGAAGACTGGACTGCTTGAGTGTGTGATCTAAGTTGTGGTTGCTAGGCTCAAGAAATGACAAGACAAGGTCATGCAAGTGGTGTGATGATATCATGACCTGGTTTTGCATGCCATGTGGTTATGATGGAAATATCAGAACGTGATGACTTGGTTTTGCATACCATGTGGTTTATGATGGAAATATGAGAATAGATTAATACCATGTGGTTATGATGGAGAAAGAATGAAATTTGTTCAATGTTTACCAATCCAATCTTCATCTCCCAGCTGGGAGTCATTAAATGTATACTCTTTTTTTTTTTTTAATTTCGATTATCTTTTAAAGAGTTCCACAAGGTTGAATGAACGT
>Glyma16g33850.2 sequence type=CDS gene model=Glyma16g33850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCGAGGAGGGAAGGCGAAGAAGAAGGAAGAAGGGGAAGAAGAGGCCAATCTCACAAACCCAGAAACGATAGAGCGGAAGAGGTTGAAATCCTTGGCCATTTCCCACAACATTCTCTCTGAGACACCTGCACGGAGCTCCGTTCAGCTGAACCCTTCCTCCGTCGTGGCCAAGCACCACGGCAAAGACATCATCAAGAAGTCTCAGAGGAAGAGCAGCAGGTACCTCTTCTCCTTCCCCGGCTTAATTGCTCCCATCGCCGGTGGCAAGATCGGTGACCTCAAGGACTTGGGCACCAAAAACCCCGTTCTCTACCTCGATTTCCCCCAGGGTCAAATGAAGTTATTCGGGACCATTGTATATCCAAAGAACAGATACTTGACTCTACAGTTCCCTAAAGGTGGAAAGAGTGTAATGTGTGAGGATTATTTTGATAACATGATAGTATTTTCGGATGCATGGTGGATCGGGAGGAAAGAAGAAAACCCAGAAGAAGCCAAGCTGGAATTTCCTAAGGAATTGTATGAGGGACACCAATCTGAATATGACTTTAAAGGGGGTGCAGGTGCTGGTGCAGCTTCTGTAGTTAACCAAGGTGTTCCCAGAACCAAGATTCAACGTGTAGAGCAAGAGTCACCGAAGACACCCACTGAAGATGATTTGTCAGACAGTGAAATCAATTTAGAAGATACAAAGGAATTGGTTCCGGTCCGGCATTCAACAAGAACTGCAAAAAAATCATATAAATTTGCTGAAATTTCTTCCGGTGATGATTCTGGTGAAAACAGCCCTGACCTTTCTGATCATGAAGAGAAAGTGGCGGAAGTTGATACTGCTATACAGAAAAAAACTGTAGTTTTTGACCTCGATGATGAGGATGATGCACCAGTAGATCAACCTGCCAAGAAAAATAATGAGTCTGCTTCTCGATCAAAATGTAAGGAAGTGTCTCAATCTGCTTCAGCGAGTGCATCTACTGAAGTTAAGTCCAGTAATCGTGGTTCACTTGTTCAGGCTACTATATCCACATTATTCAAGAAAGTGGAAGAAAAGAAAACTCCAAGAAGTTCGAGGAAATCTCCATCTTCAAAACCTTCTGGCCAGAAGTCACAGCCTGCTGGTTCAAAAAGAAAGACTGATCTGGATGAAGGATCCAAAAAAAGGGCAAGAAAGACCAAGGACAAAGATCCTGGTAAAAAAATCAAGGCGAAAAGCAAGAAAGACAATGTTGAAGATGATGATGATGATGATGATGGTGATGACATTGAAGAATTTTCAAATGCTTCGGAGGATACTAATGAAAGTGATGAAGACTGGACTGCTTGA >Glyma16g33850.3 sequence type=CDS gene model=Glyma16g33850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCGAGGAGGGAAGGCGAAGAAGAAGGAAGAAGGGGAAGAAGAGGCCAATCTCACAAACCCAGAAACGATAGAGCGGAAGAGGTTGAAATCCTTGGCCATTTCCCACAACATTCTCTCTGAGACACCTGCACGGAGCTCCGTTCAGCTGAACCCTTCCTCCGTCGTGGCCAAGCACCACGGCAAAGACATCATCAAGAAGTCTCAGAGGAAGAGCAGCAGGTACCTCTTCTCCTTCCCCGGCTTAATTGCTCCCATCGCCGGTGGCAAGATCGGTGACCTCAAGGACTTGGGCACCAAAAACCCCGTTCTCTACCTCGATTTCCCCCAGGGTCAAATGAAGTTATTCGGGACCATTGTATATCCAAAGAACAGATACTTGACTCTACAGTTCCCTAAAGGTGGAAAGAGTGTAATGTGTGAGGATTATTTTGATAACATGATAGTATTTTCGGATGCATGGTGGATCGGGAGGAAAGAAGAAAACCCAGAAGAAGCCAAGCTGGAATTTCCTAAGGAATTGTATGAGGGACACCAATCTGAATATGACTTTAAAGGGGGTGCAGGTGCTGGTGCAGCTTCTGTAGTTAACCAAGGTGTTCCCAGAACCAAGATTCAACGTGTAGAGCAAGAGTCACCGAAGACACCCACTGAAGATGATTTGTCAGACAGTGAAATCAATTTAGAAGATACAAAGGAATTGGTTCCGGTCCGGCATTCAACAAGAACTGCAAAAAAATCATATAAATTTGCTGAAATTTCTTCCGGTGATGATTCTGGTGAAAACAGCCCTGACCTTTCTGATCATGAAGAGAAAGTGATACAGAAAAAAACTGTAGTTTTTGACCTCGATGATGAGGATGATGCACCAGTAGATCAACCTGCCAAGAAAAATAATGAGTCTGCTTCTCGATCAAAATGTAAGGAAGTGTCTCAATCTGCTTCAGCGAGTGCATCTACTGAAGTTAAGTCCAGTAATCGTGGTTCACTTGTTCAGGCTACTATATCCACATTATTCAAGAAAGTGGAAGAAAAGAAAACTCCAAGAAGTTCGAGGAAATCTCCATCTTCAAAACCTTCTGGCCAGAAGTCACAGCCTGCTGGTTCAAAAAGAAAGACTGATCTGGATGAAGGATCCAAAAAAAGGGCAAGAAAGACCAAGGACAAAGATCCTGGTAAAAAAATCAAGGCGAAAAGCAAGAAAGACAATGTTGAAGATGATGATGATGATGATGATGGTGATGACATTGAAGAATTTTCAAATGCTTCGGAGGATACTAATGAAAGTGATGAAGACTGGACTGCTTGA
>Glyma16g33850.2 sequence type=predicted peptide gene model=Glyma16g33850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARGGKAKKKEEGEEEANLTNPETIERKRLKSLAISHNILSETPARSSVQLNPSSVVAKHHGKDIIKKSQRKSSRYLFSFPGLIAPIAGGKIGDLKDLGTKNPVLYLDFPQGQMKLFGTIVYPKNRYLTLQFPKGGKSVMCEDYFDNMIVFSDAWWIGRKEENPEEAKLEFPKELYEGHQSEYDFKGGAGAGAASVVNQGVPRTKIQRVEQESPKTPTEDDLSDSEINLEDTKELVPVRHSTRTAKKSYKFAEISSGDDSGENSPDLSDHEEKVAEVDTAIQKKTVVFDLDDEDDAPVDQPAKKNNESASRSKCKEVSQSASASASTEVKSSNRGSLVQATISTLFKKVEEKKTPRSSRKSPSSKPSGQKSQPAGSKRKTDLDEGSKKRARKTKDKDPGKKIKAKSKKDNVEDDDDDDDGDDIEEFSNASEDTNESDEDWTA* >Glyma16g33850.3 sequence type=predicted peptide gene model=Glyma16g33850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARGGKAKKKEEGEEEANLTNPETIERKRLKSLAISHNILSETPARSSVQLNPSSVVAKHHGKDIIKKSQRKSSRYLFSFPGLIAPIAGGKIGDLKDLGTKNPVLYLDFPQGQMKLFGTIVYPKNRYLTLQFPKGGKSVMCEDYFDNMIVFSDAWWIGRKEENPEEAKLEFPKELYEGHQSEYDFKGGAGAGAASVVNQGVPRTKIQRVEQESPKTPTEDDLSDSEINLEDTKELVPVRHSTRTAKKSYKFAEISSGDDSGENSPDLSDHEEKVIQKKTVVFDLDDEDDAPVDQPAKKNNESASRSKCKEVSQSASASASTEVKSSNRGSLVQATISTLFKKVEEKKTPRSSRKSPSSKPSGQKSQPAGSKRKTDLDEGSKKRARKTKDKDPGKKIKAKSKKDNVEDDDDDDDGDDIEEFSNASEDTNESDEDWTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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