SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30650 | AT | Annotation by Michelle Graham. TAIR10: ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr2:13053777-13056315 REVERSE LENGTH=378 | SoyBase | E_val: 3.00E-130 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| KOG1684 | KOG | Enoyl-CoA hydratase | JGI | ISS | |
| PTHR11941 | Panther | ENOYL-COA HYDRATASE-RELATED | JGI | ISS | |
| PTHR11941:SF19 | Panther | 3-HYDROXYACYL-COA DEHYDROGENASE | JGI | ISS | |
| PF00378 | PFAM | Enoyl-CoA hydratase/isomerase family | JGI | ISS | |
| UniRef100_Q1PEY5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable 3-hydroxyisobutyryl-CoA hydrolase 2 n=1 Tax=Arabidopsis thaliana RepID=HIBC2_ARATH | SoyBase | E_val: 1.00E-127 | ISS |
| UniRef100_UPI000233EF0A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EF0A related cluster n=1 Tax=unknown RepID=UPI000233EF0A | SoyBase | E_val: 0 | ISS |
|
Glyma16g33451 not represented in the dataset |
Glyma16g33451 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g209300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g33451.2 sequence type=transcript gene model=Glyma16g33451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACAGTTTAGTATTAAGGTATGCATGTGTCTTATTCAAAACCTTTTTCATTACAGAACTATACGCAGAAAGATATATATGGCTCAGAGTTTCACCCTTGACAGAGATGAAAAGCAGATTTATCAAATAAAAAAGAATTTACAAATGTGTGAGAATGACCCTTCCGTGAAACTCGTGATATTGAAGGCTAATGGAAAAGCTTTTTCTGCTGGTGGCGATGTAGTGTCAGTAATCATGTCTTCACTTGCAGGACACTGGATCTATGCTTCGATGTTTTACAAGAAATTGCTTACTTTAGAGTATTTTATAGCGACCTGCAGAAAGCCTTTGGTCTCTCTCATTAATGGATTAGTCATGGGAGCAGGAGCAGGCCTATCCATAAATACGATGTTCAGGGTTGTGACTGAAAAAGCTGTATTTGCGATGCCAGAGGCATCCATTGGACTTTTTCCTGATGTTGGTGCATCCTACTTCCTTTCTAGACTACCTGGCTATTTTGGTGAGTACATTGGACTAACTGGTGCACAGCTAGATGGAGCAGAAATGGTAGCATGCGGTTTAGCCACCCATTTTGTCCCTTCAGTGAAGATAAATACACTAGAAAATGTGCTACAAACTGTTACTAATTCGAATTTACCAATAGCGGAAGTTATAGAAACATTCGCAGAGAAAGCAAATGTGAAGGAAGACAGCTCATTCAGAAGATTGGAGATTATAAACAAATGTTTCTCAAAAGGGACACTGGAGGAAATTATTATATGCTTGGAAAAGGAATCAGAAAATGGAGCAGAAGAGTGGATAAAAAATGCATTAAGTTCCATGCGATCGTCTTGTCCCTTGAGCCTCAAAATATTTTTGAAATCAATTAGAACAGGCCGTGTACAAAATATTGAACAATGCCTTTACCGGGATTACACCATTGCTGGCCACTTCCTCAGAAGAACCATTAGCAATGATTTCTATGAGGGGACAAGAGCAAAGCTGATTGATAAAGACAACAAGCCCAAGTGGGAACCTTCAAAGCTAGAGCTGGTTAGCGAAGAAATGGTAGATCAGTGCTTCAGGGATATCGATGAGGAGGAAATGGATTGTCTGAAACTTCCTGATAGATCCAATTCTCAAATTGCAAGCAGGTTGTAGATTGTAGCTAGACACAAGCTTGTGTCAGGAGAATTTTAAATAAAGAAAATTGGGTTTGTTAACGTTTAATTTGAGAAAATGTTTGTTATGCGATGTTAATGTTTCAAGGCTTGCAATTAATAAGTTCCGTTTTAGTCTTCTATATAGAAAAATTGGGTATTAGCTCTAATATATCTGTTTTATGCAAGTGTATCCGGTTTGCTTCTATATATGTATTTTCTCAAACTATCATGCCTCATCTTTGTCACACCTTGTACTACTGTGGGA >Glyma16g33451.3 sequence type=transcript gene model=Glyma16g33451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTGATCAGCAAATAGTTGGCTCGGTTATAGAGTTGAATTTGATTCCTTCGAAAAAGATCTAAAAAAATTTTGAGTTTGAATTTGTGAATAAAAAAACAAATAATCATAAGAGAAGATCTTAATAAAGATAAATATGCCGATATATATAACATGGTTAAAAAATATTCTCTTTCTATCAAATTAGTTAATTATATATCCAACTATCAATATACTTTCTGATTATTTGACGATTATATCCTCTGTACAGGTACTTTTCACTGGAAATTCTTGTGTGAAGATAGTGACTTTGAACAGAACCCAGAAGTTAAATACCCTTAATTATGAAATGATTTATCAAATAAAAAAGAATTTACAAATGTGTGAGAATGACCCTTCCGTGAAACTCGTGATATTGAAGGCTAATGGAAAAGCTTTTTCTGCTGGTGGCGATGTAGTGTCAGTAATCATGTCTTCACTTGCAGGACACTGGATCTATGCTTCGATGTTTTACAAGAAATTGCTTACTTTAGAGTATTTTATAGCGACCTGCAGAAAGCCTTTGGTCTCTCTCATTAATGGATTAGTCATGGGAGCAGGAGCAGGCCTATCCATAAATACGATGTTCAGGGTTGTGACTGAAAAAGCTGTATTTGCGATGCCAGAGGCATCCATTGGACTTTTTCCTGATGTTGGTGCATCCTACTTCCTTTCTAGACTACCTGGCTATTTTGGTGAGTACATTGGACTAACTGGTGCACAGCTAGATGGAGCAGAAATGGTAGCATGCGGTTTAGCCACCCATTTTGTCCCTTCAGTGAAGATAAATACACTAGAAAATGTGCTACAAACTGTTACTAATTCGAATTTACCAATAGCGGAAGTTATAGAAACATTCGCAGAGAAAGCAAATGTGAAGGAAGACAGCTCATTCAGAAGATTGGAGATTATAAACAAATGTTTCTCAAAAGGGACACTGGAGGAAATTATTATATGCTTGGAAAAGGAATCAGAAAATGGAGCAGAAGAGTGGATAAAAAATGCATTAAGTTCCATGCGATCGTCTTGTCCCTTGAGCCTCAAAATATTTTTGAAATCAATTAGAACAGGCCGTGTACAAAATATTGAACAATGCCTTTACCGGGATTACACCATTGCTGGCCACTTCCTCAGAAGAACCATTAGCAATGATTTCTATGAGGGGACAAGAGCAAAGCTGATTGATAAAGACAACAAGCCCAAGTGGGAACCTTCAAAGCTAGAGCTGGTTAGCGAAGAAATGGTAGATCAGTGCTTCAGGGATATCGATGAGGAGGAAATGGATTGTCTGAAACTTCCTGATAGATCCAATTCTCAAATTGCAAGCAGGTTGTAGATTGTAGCTAGACACAAGCTTGTGTCAGGAGAATTTTAAATAAAGAAAATTGGGTTTGTTAACGTTTAATTTGAGAAAATGTTTGTTATGCGATGTTAATGTTTCAAGGCTTGCAATTAATAAGTTCCGTTTTAGTCTTCTATATAGAAAAATTGGGTATTAGCTCTAATATATCTGTTTTATGCAAGTGTATCCGGTTTGCTTCTATATATGTATTTTCTCAAACTATCATGCCTCATCTTTGTCACACCTTGTACTACTGTGGGA
>Glyma16g33451.1 sequence type=CDS gene model=Glyma16g33451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACAGTTTAGTATTAAGGTATGCATGTGTCTTATTCAAAACCTTTTTCATTACAGAACTATACGCAGAAAGATATATATGGCTCAGAGTTTCACCCTTGACAGAGATGAAAAGCAGGTACTTTTCACTGGAAATTCTTGTGTGAAGATAGTGACTTTGAACAGAACCCAGAAGTTAAATACCCTTAATTATGAAATGATTTATCAAATAAAAAAGAATTTACAAATGTGTGAGAATGACCCTTCCGTGAAACTCGTGATATTGAAGGCTAATGGAAAAGCTTTTTCTGCTGGTGGCGATGTAGTGTCAGTAATCATGTCTTCACTTGCAGGACACTGGATCTATGCTTCGATGTTTTACAAGAAATTGCTTACTTTAGAGTATTTTATAGCGACCTGCAGAAAGCCTTTGGTCTCTCTCATTAATGGATTAGTCATGGGAGCAGGAGCAGGCCTATCCATAAATACGATGTTCAGGGTTGTGACTGAAAAAGCTGTATTTGCGATGCCAGAGGCATCCATTGGACTTTTTCCTGATGTTGGTGCATCCTACTTCCTTTCTAGACTACCTGGCTATTTTGGTGAGTACATTGGACTAACTGGTGCACAGCTAGATGGAGCAGAAATGGTAGCATGCGGTTTAGCCACCCATTTTGTCCCTTCAGTGAAGATAAATACACTAGAAAATGTGCTACAAACTGTTACTAATTCGAATTTACCAATAGCGGAAGTTATAGAAACATTCGCAGAGAAAGCAAATGTGAAGGAAGACAGCTCATTCAGAAGATTGGAGATTATAAACAAATGTTTCTCAAAAGGGACACTGGAGGAAATTATTATATGCTTGGAAAAGGAATCAGAAAATGGAGCAGAAGAGTGGATAAAAAATGCATTAAGTTCCATGCGATCGTCTTGTCCCTTGAGCCTCAAAATATTTTTGAAATCAATTAGAACAGGCCGTGTACAAAATATTGAACAATGCCTTTACCGGGATTACACCATTGCTGGCCACTTCCTCAGAAGAACCATTAGCAATGATTTCTATGAGGGGACAAGAGCAAAGCTGATTGATAAAGACAACAAGCCCAAGTGGGAACCTTCAAAGCTAGAGCTGGTTAGCGAAGAAATGGTAGATCAGTGCTTCAGGGATATCGATGAGGAGGAAATGGATTGTCTGAAACTTCCTGATAGATCCAATTCTCAAATTGCAAGCAGGTTGTAG >Glyma16g33451.2 sequence type=CDS gene model=Glyma16g33451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACAGTTTAGTATTAAGGTATGCATGTGTCTTATTCAAAACCTTTTTCATTACAGAACTATACGCAGAAAGATATATATGGCTCAGAGTTTCACCCTTGACAGAGATGAAAAGCAGATTTATCAAATAAAAAAGAATTTACAAATGTGTGAGAATGACCCTTCCGTGAAACTCGTGATATTGAAGGCTAATGGAAAAGCTTTTTCTGCTGGTGGCGATGTAGTGTCAGTAATCATGTCTTCACTTGCAGGACACTGGATCTATGCTTCGATGTTTTACAAGAAATTGCTTACTTTAGAGTATTTTATAGCGACCTGCAGAAAGCCTTTGGTCTCTCTCATTAATGGATTAGTCATGGGAGCAGGAGCAGGCCTATCCATAAATACGATGTTCAGGGTTGTGACTGAAAAAGCTGTATTTGCGATGCCAGAGGCATCCATTGGACTTTTTCCTGATGTTGGTGCATCCTACTTCCTTTCTAGACTACCTGGCTATTTTGGTGAGTACATTGGACTAACTGGTGCACAGCTAGATGGAGCAGAAATGGTAGCATGCGGTTTAGCCACCCATTTTGTCCCTTCAGTGAAGATAAATACACTAGAAAATGTGCTACAAACTGTTACTAATTCGAATTTACCAATAGCGGAAGTTATAGAAACATTCGCAGAGAAAGCAAATGTGAAGGAAGACAGCTCATTCAGAAGATTGGAGATTATAAACAAATGTTTCTCAAAAGGGACACTGGAGGAAATTATTATATGCTTGGAAAAGGAATCAGAAAATGGAGCAGAAGAGTGGATAAAAAATGCATTAAGTTCCATGCGATCGTCTTGTCCCTTGAGCCTCAAAATATTTTTGAAATCAATTAGAACAGGCCGTGTACAAAATATTGAACAATGCCTTTACCGGGATTACACCATTGCTGGCCACTTCCTCAGAAGAACCATTAGCAATGATTTCTATGAGGGGACAAGAGCAAAGCTGATTGATAAAGACAACAAGCCCAAGTGGGAACCTTCAAAGCTAGAGCTGGTTAGCGAAGAAATGGTAGATCAGTGCTTCAGGGATATCGATGAGGAGGAAATGGATTGTCTGAAACTTCCTGATAGATCCAATTCTCAAATTGCAAGCAGGTTGTAG >Glyma16g33451.3 sequence type=CDS gene model=Glyma16g33451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTATCAAATAAAAAAGAATTTACAAATGTGTGAGAATGACCCTTCCGTGAAACTCGTGATATTGAAGGCTAATGGAAAAGCTTTTTCTGCTGGTGGCGATGTAGTGTCAGTAATCATGTCTTCACTTGCAGGACACTGGATCTATGCTTCGATGTTTTACAAGAAATTGCTTACTTTAGAGTATTTTATAGCGACCTGCAGAAAGCCTTTGGTCTCTCTCATTAATGGATTAGTCATGGGAGCAGGAGCAGGCCTATCCATAAATACGATGTTCAGGGTTGTGACTGAAAAAGCTGTATTTGCGATGCCAGAGGCATCCATTGGACTTTTTCCTGATGTTGGTGCATCCTACTTCCTTTCTAGACTACCTGGCTATTTTGGTGAGTACATTGGACTAACTGGTGCACAGCTAGATGGAGCAGAAATGGTAGCATGCGGTTTAGCCACCCATTTTGTCCCTTCAGTGAAGATAAATACACTAGAAAATGTGCTACAAACTGTTACTAATTCGAATTTACCAATAGCGGAAGTTATAGAAACATTCGCAGAGAAAGCAAATGTGAAGGAAGACAGCTCATTCAGAAGATTGGAGATTATAAACAAATGTTTCTCAAAAGGGACACTGGAGGAAATTATTATATGCTTGGAAAAGGAATCAGAAAATGGAGCAGAAGAGTGGATAAAAAATGCATTAAGTTCCATGCGATCGTCTTGTCCCTTGAGCCTCAAAATATTTTTGAAATCAATTAGAACAGGCCGTGTACAAAATATTGAACAATGCCTTTACCGGGATTACACCATTGCTGGCCACTTCCTCAGAAGAACCATTAGCAATGATTTCTATGAGGGGACAAGAGCAAAGCTGATTGATAAAGACAACAAGCCCAAGTGGGAACCTTCAAAGCTAGAGCTGGTTAGCGAAGAAATGGTAGATCAGTGCTTCAGGGATATCGATGAGGAGGAAATGGATTGTCTGAAACTTCCTGATAGATCCAATTCTCAAATTGCAAGCAGGTTGTAG
>Glyma16g33451.1 sequence type=predicted peptide gene model=Glyma16g33451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high EQFSIKVCMCLIQNLFHYRTIRRKIYMAQSFTLDRDEKQVLFTGNSCVKIVTLNRTQKLNTLNYEMIYQIKKNLQMCENDPSVKLVILKANGKAFSAGGDVVSVIMSSLAGHWIYASMFYKKLLTLEYFIATCRKPLVSLINGLVMGAGAGLSINTMFRVVTEKAVFAMPEASIGLFPDVGASYFLSRLPGYFGEYIGLTGAQLDGAEMVACGLATHFVPSVKINTLENVLQTVTNSNLPIAEVIETFAEKANVKEDSSFRRLEIINKCFSKGTLEEIIICLEKESENGAEEWIKNALSSMRSSCPLSLKIFLKSIRTGRVQNIEQCLYRDYTIAGHFLRRTISNDFYEGTRAKLIDKDNKPKWEPSKLELVSEEMVDQCFRDIDEEEMDCLKLPDRSNSQIASRL* >Glyma16g33451.2 sequence type=predicted peptide gene model=Glyma16g33451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high EQFSIKVCMCLIQNLFHYRTIRRKIYMAQSFTLDRDEKQIYQIKKNLQMCENDPSVKLVILKANGKAFSAGGDVVSVIMSSLAGHWIYASMFYKKLLTLEYFIATCRKPLVSLINGLVMGAGAGLSINTMFRVVTEKAVFAMPEASIGLFPDVGASYFLSRLPGYFGEYIGLTGAQLDGAEMVACGLATHFVPSVKINTLENVLQTVTNSNLPIAEVIETFAEKANVKEDSSFRRLEIINKCFSKGTLEEIIICLEKESENGAEEWIKNALSSMRSSCPLSLKIFLKSIRTGRVQNIEQCLYRDYTIAGHFLRRTISNDFYEGTRAKLIDKDNKPKWEPSKLELVSEEMVDQCFRDIDEEEMDCLKLPDRSNSQIASRL* >Glyma16g33451.3 sequence type=predicted peptide gene model=Glyma16g33451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIYQIKKNLQMCENDPSVKLVILKANGKAFSAGGDVVSVIMSSLAGHWIYASMFYKKLLTLEYFIATCRKPLVSLINGLVMGAGAGLSINTMFRVVTEKAVFAMPEASIGLFPDVGASYFLSRLPGYFGEYIGLTGAQLDGAEMVACGLATHFVPSVKINTLENVLQTVTNSNLPIAEVIETFAEKANVKEDSSFRRLEIINKCFSKGTLEEIIICLEKESENGAEEWIKNALSSMRSSCPLSLKIFLKSIRTGRVQNIEQCLYRDYTIAGHFLRRTISNDFYEGTRAKLIDKDNKPKWEPSKLELVSEEMVDQCFRDIDEEEMDCLKLPDRSNSQIASRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
