Glyma16g33391 - SoyBase

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Report for Sequence Feature Glyma16g33391

Feature Type:	gene_model
Chromosome:	Gm16
Start:	36323596
stop:	36331696
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g33391

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08430	AT	Annotation by Michelle Graham. TAIR10: SWIB/MDM2 domain;Plus-3;GYF \| chr5:2716974-2720095 FORWARD LENGTH=553	SoyBase	E_val: 1.00E-109	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006352	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR14445	Panther	GRB10 INTERACTING GYF PROTEIN	JGI		ISS
PTHR14445:SF23	Panther	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN / PL	JGI		ISS
PF02201	PFAM	SWIB/MDM2 domain	JGI		ISS
PF02213	PFAM	GYF domain	JGI		ISS
PF03126	PFAM	Plus-3 domain	JGI		ISS
UniRef100_B9SS21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SS21_RICCO	SoyBase	E_val: 1.00E-112	ISS
UniRef100_UPI000233EF08	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF08 related cluster n=1 Tax=unknown RepID=UPI000233EF08	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g33391

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g33391 not represented in the dataset	Glyma16g33391 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g33391

Paralog	Evidence	Comments
Glyma09g28660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g33391 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g208800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g33391

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g33391

Limit To All Plant Sequences

>Glyma16g33391.2   sequence type=transcript   gene model=Glyma16g33391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGCCTGTTGTACTTTTCACCGTTTTATGCTCTGTTTCAGTGAACAACAACGCTGCTTCTTCACTCTGCCCAGAGACACGCACACTGCTCAGTACTCTGTACTGCACTAATCAGCTATAACTCTCTCAAATCTCTGCTTCTTCTAGAATCTTCCACGGTACTTTCTCAACACTGTCACTCTCAGTCAACGCAACCTCTTCACCGGAGAGAACATGTGAATAGGGAAATTTGCAAGGTGGAAGACTGAAAGCATTTAGTGGAGGAGGTTGGATTTAGGGTCATTTAGGATAGGTAGGATGGGTGATGAACCTCATGCTGGTTCTTTCGGGCTGGAGGAAATTTATGGGGGGGTTCCGACCCCCATGAGAAGGAAAAGGAAATACAGGACAAAGAAAAAGGAATATCAAGGATGGGGATCGACTTCCCTTATTTGGTTTCTCGAATCCATTGGTAGAGATACCAGCACCGAGATAACTCAAAGTGAGGTTGCAAATATTGTAATGGAGTATGTTAAGCAGCACAACCTCTTTCATAAGACAAAAAAGAAGAGAATTGAGTGTGATGAGAAGCTGCATTTGCTGTTTGGGAGGAAGACCATTAGCCGGCTGAAAATCAATGACTTGCTTGAGTCACACTTTGCGGAGAACTGTGAGGAGTCCTCTGATGGTATTTTCTTTGACTCAGAAGATGATGAGAGTGCCTTAACAGCTTGTGAAACCCCGAGAACAGCACCTTCGGAGAGGAAGAGTCAACCAAAGAAACCAGCTTTTGAAAAACCAAGGAGCTGTTTTGCTGCCATTGTTCCTGCCAACATCAAGCTTGTTTATTTGAAGAGGAGTCTAGTTGAGGACCTTTTAAAGGACCCTGAAACTTTTGAGACTAAAGTAGTTGGAAGCTTCATAAGAATCAGATGTGACCCAAATGATTACCTTCAGAAAAACTCACACCAGCTTTTGCAAGTCACAGGTATGAAGAAGAGTTCTGAAGTAAAGGGGGAAATTCACCTTCAAGCTTCTGGTTTCATTAAAGACATCAGGATTCAAATGCTTTCAGATGATAATTTCTCTGTGGAGGAGTGTGAGGATTTGCACCAAAGAGTAAAAGATTGCTTGGTCAAGAGACCTATGATTGTGGATATGGAGCAGACAGCTAGAGTATTGCATGAGGATATGACTAGGCATTGGCTTGCAAGAGAACTTATTCTGCTACAAAATCTTATTGATCAAGCTAATGAAAAGGGTTGGCGCAGAGAACTGGACGAGTACCTACGAAGAAGGGAGAAGCTTCAGAGTCCTGACGAGCAGGAACGGTTATTGCGTGAATTTCCTCAAGTTATTGCAGATGAGCAAAAATCAGAATCTACAACACCAGATGTTCTAGATAAAAACGTAGAAAACAATTTACAGGAGTTCTGGCAGGCTACCTATACAAAATCATCTTCAGTGACTGAGGTCCCAAATGCTGTTGCAAATACAAAATTGGATATTGCTGATCTTGTAAAACAACAGAGAAATTCACCAAAGTCAATGTCCATTCCCCGCAGAGCACCAGAAGTTCCTCTTTTGGATATGACAAATAATAGCACTATGTTGAATTGCATTTCTCGAGACACCACAGAGCACCAATCCCGTGGCTTATCTGTCCAACTGCCACCACTTCAACAAACAGACTTTGCATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCGAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGTTATAAGGCTAAGTGATGGCTTACCTGTCCAACAGCCACCAGAGCAACAAACAGACTTTGCATATAACAATGGAACATCTAAGCCAGTCGAATCACAGGAAGGGAAGATCTCTCAAGCACTGCCCAGCAAACAGATACGGCCATCTCAGCTTGAAGTTATAGAGCTATGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGGCATGTCTAAGCCAGCCGAATCACATGAAGTGAAGATCTCTCAAGCACTGCCCAACAAACAGATACTGCAATCACAGCTCGATGTTATAGAGCTAAGTGATGGCTTACCTGTTCAGCAGCTGCCAGAGCAACAAATAAATTTTGCATATAAGAATGACATGTCTAAGCCAGCTGAATTGCATGAAGTGAAGATCTCTCAAGCACAGTCCAACAAACAAATACAGCCATCTCAGATTCAAGTTATAGAGCTAAGTGATGACGATGATGAAGAAAATGAAAAACCAAGTACTGCAAAACTGGTTCCTTCTGTGCAATCGGATACCTTGATGTGGCATTACAGAGATCCCATGGGAAATGTACAAGGACCATTTTCCTTAATTTCTCTGAAACGTTGGAGTGATGCTGGCTACTTTCCCCGACATTTCAAGGTCTGGAAGTCAGGTAATAGGCAGGATGAAGATGTATTACTGGTGAACATACTAGCCCAATTTTTCCCCCTTTAGTCAAATTGCTTATTGATGCACATTGTAAAATCCAGGTCAATAATTGTGTTGTGATTACCAGGTAACTGCAATTGTAACTAGAAACTCATGCTCTCTAACTGAATTGTTGTTCCTCCCTCCCCCCTTGCTTGTCTACCTCTTGACCTTGTCAAGATGAATCGATAACATTGAATCATATTCATACATGGTGCATCTGAATTCTGAATGTTAGATTGTTTGGGCAATGTGGAGCGATGTTGCAATGCTCCTTACCAGGCTATGGTTGTCCAAACTAATGATTGTTTAAGCTATAGTGAAAATATCAACTTGGCAAGGA

Coding sequences of Glyma16g33391

Limit To All Plant Sequences

>Glyma16g33391.1   sequence type=CDS   gene model=Glyma16g33391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGATGAACCTCATGCTGGTTCTTTCGGGCTGGAGGAAATTTATGGGGGGGTTCCGACCCCCATGAGAAGGAAAAGGAAATACAGGACAAAGAAAAAGGAATATCAAGGATGGGGATCGACTTCCCTTATTTGGTTTCTCGAATCCATTGGTAGAGATACCAGCACCGAGATAACTCAAAGTGAGGTTGCAAATATTGTAATGGAGTATGTTAAGCAGCACAACCTCTTTCATAAGACAAAAAAGAAGAGAATTGAGTGTGATGAGAAGCTGCATTTGCTGTTTGGGAGGAAGACCATTAGCCGGCTGAAAATCAATGACTTGCTTGAGTCACACTTTGCGGAGAACTGTGAGGAGTCCTCTGATGGTATTTTCTTTGACTCAGAAGATGATGAGAGTGCCTTAACAGCTTGTGAAACCCCGAGAACAGCACCTTCGGAGAGGAAGAGTCAACCAAAGAAACCAGCTTTTGAAAAACCAAGGAGCTGTTTTGCTGCCATTGTTCCTGCCAACATCAAGCTTGTTTATTTGAAGAGGAGTCTAGTTGAGGACCTTTTAAAGGACCCTGAAACTTTTGAGACTAAAGTAGTTGGAAGCTTCATAAGAATCAGATGTGACCCAAATGATTACCTTCAGAAAAACTCACACCAGCTTTTGCAAGTCACAGGTATGAAGAAGAGTTCTGAAGTAAAGGGGGAAATTCACCTTCAAGCTTCTGGTTTCATTAAAGACATCAGGATTCAAATGCTTTCAGATGATAATTTCTCTGTGGAGGAGTGTGAGGATTTGCACCAAAGAGTAAAAGATTGCTTGGTCAAGAGACCTATGATTGTGGATATGGAGCAGACAGCTAGAGTATTGCATGAGGATATGACTAGGCATTGGCTTGCAAGAGAACTTATTCTGCTACAAAATCTTATTGATCAAGCTAATGAAAAGGGTTGGCGCAGAGAACTGGACGAGTACCTACGAAGAAGGGAGAAGCTTCAGAGTCCTGACGAGCAGGAACGGTTATTGCGTGAATTTCCTCAAGTTATTGCAGATGAGCAAAAATCAGAATCTACAACACCAGATGTTCTAGATAAAAACGTAGAAAACAATTTACAGGAGTTCTGGCAGGCTACCTATACAAAATCATCTTCAGTGACTGAGGTCCCAAATGCTGTTGCAAATACAAAATTGGATATTGCTGATCTTGTAAAACAACAGAGAAATTCACCAAAGTCAATGTCCATTCCCCGCAGAGCACCAGAAGTTCCTCTTTTGGATATGACAAATAATAGCACTATGTTGAATTGCATTTCTCGAGACACCACAGAGCACCAATCCCGTGGCTTATCTGTCCAACTGCCACCACTTCAACAAACAGACTTTGCATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCGAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGTTATAAGGCTAAGTGATGGCTTACCTGTCCAACAGCCACCAGAGCAACAAACAGACTTTGCATATAACAATGGAACATCTAAGCCAGTCGAATCACAGGAAGGGAAGATCTCTCAAGCACTGCCCAGCAAACAGATACGGCCATCTCAGCTTGAAGTTATAGAGCTATGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGGCATGTCTAAGCCAGCCGAATCACATGAAGTGAAGATCTCTCAAGCACTGCCCAACAAACAGATACTGCAATCACAGCTCGATGTTATAGAGCTAAGTGATGGCTTACCTGTTCAGCAGCTGCCAGAGCAACAAATAAATTTTGCATATAAGAATGACATGTCTAAGCCAGCTGAATTGCATGAAGTGAAGATCTCTCAAGCACAGTCCAACAAACAAATACAGCCATCTCAGATTCAAGTTATAGAGCTAAGTGATGACGATGATGAAGAAAATGAAAAACCAAGTACTGCAAAACTGGTTCCTTCTGTGCAATCGGATACCTTGATGTGGCATTACAGAGATCCCATGGGAAATGTACAAGGACCATTTTCCTTAATTTCTCTGAAACGTTGGAGTGATGCTGGCTACTTTCCCCGACATTTCAAGGTCTGGAAGTCAGGTAATAGGCAGGATGAAGATGTATTACTGGTGAACATACTAGCCCAATTTTTCCCCCTTTAG

>Glyma16g33391.2   sequence type=CDS   gene model=Glyma16g33391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGATGAACCTCATGCTGGTTCTTTCGGGCTGGAGGAAATTTATGGGGGGGTTCCGACCCCCATGAGAAGGAAAAGGAAATACAGGACAAAGAAAAAGGAATATCAAGGATGGGGATCGACTTCCCTTATTTGGTTTCTCGAATCCATTGGTAGAGATACCAGCACCGAGATAACTCAAAGTGAGGTTGCAAATATTGTAATGGAGTATGTTAAGCAGCACAACCTCTTTCATAAGACAAAAAAGAAGAGAATTGAGTGTGATGAGAAGCTGCATTTGCTGTTTGGGAGGAAGACCATTAGCCGGCTGAAAATCAATGACTTGCTTGAGTCACACTTTGCGGAGAACTGTGAGGAGTCCTCTGATGGTATTTTCTTTGACTCAGAAGATGATGAGAGTGCCTTAACAGCTTGTGAAACCCCGAGAACAGCACCTTCGGAGAGGAAGAGTCAACCAAAGAAACCAGCTTTTGAAAAACCAAGGAGCTGTTTTGCTGCCATTGTTCCTGCCAACATCAAGCTTGTTTATTTGAAGAGGAGTCTAGTTGAGGACCTTTTAAAGGACCCTGAAACTTTTGAGACTAAAGTAGTTGGAAGCTTCATAAGAATCAGATGTGACCCAAATGATTACCTTCAGAAAAACTCACACCAGCTTTTGCAAGTCACAGGTATGAAGAAGAGTTCTGAAGTAAAGGGGGAAATTCACCTTCAAGCTTCTGGTTTCATTAAAGACATCAGGATTCAAATGCTTTCAGATGATAATTTCTCTGTGGAGGAGTGTGAGGATTTGCACCAAAGAGTAAAAGATTGCTTGGTCAAGAGACCTATGATTGTGGATATGGAGCAGACAGCTAGAGTATTGCATGAGGATATGACTAGGCATTGGCTTGCAAGAGAACTTATTCTGCTACAAAATCTTATTGATCAAGCTAATGAAAAGGGTTGGCGCAGAGAACTGGACGAGTACCTACGAAGAAGGGAGAAGCTTCAGAGTCCTGACGAGCAGGAACGGTTATTGCGTGAATTTCCTCAAGTTATTGCAGATGAGCAAAAATCAGAATCTACAACACCAGATGTTCTAGATAAAAACGTAGAAAACAATTTACAGGAGTTCTGGCAGGCTACCTATACAAAATCATCTTCAGTGACTGAGGTCCCAAATGCTGTTGCAAATACAAAATTGGATATTGCTGATCTTGTAAAACAACAGAGAAATTCACCAAAGTCAATGTCCATTCCCCGCAGAGCACCAGAAGTTCCTCTTTTGGATATGACAAATAATAGCACTATGTTGAATTGCATTTCTCGAGACACCACAGAGCACCAATCCCGTGGCTTATCTGTCCAACTGCCACCACTTCAACAAACAGACTTTGCATATAAGAATGACATGTCTAAGCCAGCCAATTCACATGAAGCGAAAATCTCTCAAGCACTGCCTGACAAACAGATGTGGTCATCTCAGATTCGAGTTATAAGGCTAAGTGATGGCTTACCTGTCCAACAGCCACCAGAGCAACAAACAGACTTTGCATATAACAATGGAACATCTAAGCCAGTCGAATCACAGGAAGGGAAGATCTCTCAAGCACTGCCCAGCAAACAGATACGGCCATCTCAGCTTGAAGTTATAGAGCTATGTGATGACTTATCTGTCCAACAGCCTCCAGAGCAACAAACAAACTTCACATATAAGAATGGCATGTCTAAGCCAGCCGAATCACATGAAGTGAAGATCTCTCAAGCACTGCCCAACAAACAGATACTGCAATCACAGCTCGATGTTATAGAGCTAAGTGATGGCTTACCTGTTCAGCAGCTGCCAGAGCAACAAATAAATTTTGCATATAAGAATGACATGTCTAAGCCAGCTGAATTGCATGAAGTGAAGATCTCTCAAGCACAGTCCAACAAACAAATACAGCCATCTCAGATTCAAGTTATAGAGCTAAGTGATGACGATGATGAAGAAAATGAAAAACCAAGTACTGCAAAACTGGTTCCTTCTGTGCAATCGGATACCTTGATGTGGCATTACAGAGATCCCATGGGAAATGTACAAGGACCATTTTCCTTAATTTCTCTGAAACGTTGGAGTGATGCTGGCTACTTTCCCCGACATTTCAAGGTCTGGAAGTCAGGTAATAGGCAGGATGAAGATGTATTACTGGTGAACATACTAGCCCAATTTTTCCCCCTTTAG

Predicted protein sequences of Glyma16g33391

Limit To All Plant Sequences

>Glyma16g33391.1   sequence type=predicted peptide   gene model=Glyma16g33391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDEPHAGSFGLEEIYGGVPTPMRRKRKYRTKKKEYQGWGSTSLIWFLESIGRDTSTEITQSEVANIVMEYVKQHNLFHKTKKKRIECDEKLHLLFGRKTISRLKINDLLESHFAENCEESSDGIFFDSEDDESALTACETPRTAPSERKSQPKKPAFEKPRSCFAAIVPANIKLVYLKRSLVEDLLKDPETFETKVVGSFIRIRCDPNDYLQKNSHQLLQVTGMKKSSEVKGEIHLQASGFIKDIRIQMLSDDNFSVEECEDLHQRVKDCLVKRPMIVDMEQTARVLHEDMTRHWLARELILLQNLIDQANEKGWRRELDEYLRRREKLQSPDEQERLLREFPQVIADEQKSESTTPDVLDKNVENNLQEFWQATYTKSSSVTEVPNAVANTKLDIADLVKQQRNSPKSMSIPRRAPEVPLLDMTNNSTMLNCISRDTTEHQSRGLSVQLPPLQQTDFAYKNDMSKPANSHEAKISQALPDKQMWSSQIRVIRLSDGLPVQQPPEQQTDFAYNNGTSKPVESQEGKISQALPSKQIRPSQLEVIELCDDLSVQQPPEQQTNFTYKNGMSKPAESHEVKISQALPNKQILQSQLDVIELSDGLPVQQLPEQQINFAYKNDMSKPAELHEVKISQAQSNKQIQPSQIQVIELSDDDDEENEKPSTAKLVPSVQSDTLMWHYRDPMGNVQGPFSLISLKRWSDAGYFPRHFKVWKSGNRQDEDVLLVNILAQFFPL*

>Glyma16g33391.2   sequence type=predicted peptide   gene model=Glyma16g33391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDEPHAGSFGLEEIYGGVPTPMRRKRKYRTKKKEYQGWGSTSLIWFLESIGRDTSTEITQSEVANIVMEYVKQHNLFHKTKKKRIECDEKLHLLFGRKTISRLKINDLLESHFAENCEESSDGIFFDSEDDESALTACETPRTAPSERKSQPKKPAFEKPRSCFAAIVPANIKLVYLKRSLVEDLLKDPETFETKVVGSFIRIRCDPNDYLQKNSHQLLQVTGMKKSSEVKGEIHLQASGFIKDIRIQMLSDDNFSVEECEDLHQRVKDCLVKRPMIVDMEQTARVLHEDMTRHWLARELILLQNLIDQANEKGWRRELDEYLRRREKLQSPDEQERLLREFPQVIADEQKSESTTPDVLDKNVENNLQEFWQATYTKSSSVTEVPNAVANTKLDIADLVKQQRNSPKSMSIPRRAPEVPLLDMTNNSTMLNCISRDTTEHQSRGLSVQLPPLQQTDFAYKNDMSKPANSHEAKISQALPDKQMWSSQIRVIRLSDGLPVQQPPEQQTDFAYNNGTSKPVESQEGKISQALPSKQIRPSQLEVIELCDDLSVQQPPEQQTNFTYKNGMSKPAESHEVKISQALPNKQILQSQLDVIELSDGLPVQQLPEQQINFAYKNDMSKPAELHEVKISQAQSNKQIQPSQIQVIELSDDDDEENEKPSTAKLVPSVQSDTLMWHYRDPMGNVQGPFSLISLKRWSDAGYFPRHFKVWKSGNRQDEDVLLVNILAQFFPL*

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