SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33330 | AT | Annotation by Michelle Graham. TAIR10: Class I peptide chain release factor | chr1:12084968-12086238 FORWARD LENGTH=257 | SoyBase | E_val: 1.00E-88 | ISS |
| GO:0006415 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational termination | SoyBase | N/A | ISS |
| GO:0006783 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation release factor activity | SoyBase | N/A | ISS |
| PTHR11075 | Panther | PEPTIDE CHAIN RELEASE FACTOR | JGI | ISS | |
| PTHR11075:SF17 | Panther | OS01G0887400 PROTEIN | JGI | ISS | |
| PF00472 | PFAM | RF-1 domain | JGI | ISS | |
| UniRef100_Q9C875 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Class I peptide chain release factor n=1 Tax=Arabidopsis thaliana RepID=Q9C875_ARATH | SoyBase | E_val: 6.00E-86 | ISS |
| UniRef100_UPI000233B073 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B073 related cluster n=1 Tax=unknown RepID=UPI000233B073 | SoyBase | E_val: 0 | ISS |
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Glyma16g33200 not represented in the dataset |
Glyma16g33200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g28401 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g207000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g33200.2 sequence type=CDS gene model=Glyma16g33200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACACAAAACCCTCTTCAAACCAAGTCTCATCCTCACACTCAGACTCAACAAAACGGCCATTTCATTCTCACACCATCATCCATTTCGCCACTCGCAACCACCCTTTCCCTTCCTCAACACTAGTCCAATCTCACTTCCTCCAACAACGAGAATTACTAACTACACCCACTTATGGTGCTCTAATTACACCACCGTCAGCACCATCGAGGAGGGTTCCGAAAAATGCTACCTGAACCTCTCGGACGAGGAGCTCATGCGGCAGTGCGAAATGGACACGTTTAAGGCCTCGGGACCAGGTGGTCAGCACCGTAACAAGCGTGAGTCCGCAGTGCGCCTCAAACACCTACCCACAGGAATCATTGCTCAGGCTTCAGAAGATCGCTCCCAGCACAAGAACCGCGCTTCAGCGATTAATCGCCTTCGCTCTCTTATAGCTCTCAAAGTTAGGAAAACAGTGGATCTTGAAGCTTATTCACCACCTCGAGAGCTTCTTCAGATATTGCCTCCTAAATCATCCATTAGAGGGTCAGATTGTGGTTCACAAATCGGACCTAATAATCCAAAGTTTGCATCGGGAATGCAAGCTCTTTTGGATCTCATTTTTGCAGTTGAGGGGTCTGTCTCAGAAGCTGCAAAATATCTTGGGTTATCCACTGGGGCACTGTCTCGGTTAATCCTATCTGATGATTCACTTAGAAAGGAAGTAAACGATCTGCGGGCAACAAAGGGTATGAAGCCTCTCAAGTAG
>Glyma16g33200.2 sequence type=predicted peptide gene model=Glyma16g33200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHKTLFKPSLILTLRLNKTAISFSHHHPFRHSQPPFPFLNTSPISLPPTTRITNYTHLWCSNYTTVSTIEEGSEKCYLNLSDEELMRQCEMDTFKASGPGGQHRNKRESAVRLKHLPTGIIAQASEDRSQHKNRASAINRLRSLIALKVRKTVDLEAYSPPRELLQILPPKSSIRGSDCGSQIGPNNPKFASGMQALLDLIFAVEGSVSEAAKYLGLSTGALSRLILSDDSLRKEVNDLRATKGMKPLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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