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Report for Sequence Feature Glyma16g33130

Feature Type:gene_model
Chromosome:Gm16
Start:36161083
stop:36162027
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g33130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10250AT Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein | chr4:6370537-6371124 FORWARD LENGTH=195 SoyBaseE_val: 8.00E-81ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG0710 KOG Molecular chaperone (small heat-shock protein Hsp26/Hsp42) JGI ISS
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI ISS
PTHR11527:SF14Panther LETHAL(2) ESSENTIAL FOR LIFE - RELATED JGI ISS
PF00011PFAM Hsp20/alpha crystallin family JGI ISS
UniRef100_Q39820UniRef Annotation by Michelle Graham. Best UniRef hit: Hsp22.5 n=1 Tax=Glycine max RepID=Q39820_SOYBN SoyBaseE_val: 1.00E-137ISS
UniRef100_Q39820UniRef Annotation by Michelle Graham. Most informative UniRef hit: Hsp22.5 n=1 Tax=Glycine max RepID=Q39820_SOYBN SoyBaseE_val: 1.00E-137ISS

Expression Patterns of Glyma16g33130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g33130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g206200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g33130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g33130
>Glyma16g33130.1   sequence type=CDS   gene model=Glyma16g33130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGCACTTTTTAGTACTAGTACCACTGATCTTGCTTGTTTTTGCTGGTTTCCCATCCAAAGCAAAAGGGTCTCTGCTACCATTCACAAATCATCCAAATACCCTCTTGGCTGATCTATGGTCTAATCATTTCCCTGATCCATTTCGCGTGTTAGAGCAAATCCCATTTGGGGTTGACAAAGATGAAACATTCACAGCTCTATCATCACATGCAAGAGTGGATTGGAAGGAGACACCAGAAGGGCATGTCATAATGCTAGATGTGCCAGGGTTGAAGAGAGATGAGATCAAGATAGAAGTGGAAGGGAATAGAGTGCTGAGAGTGAGTGGAGAAAGGAAGAGGGAAGAGGAGAAGGAAGGGGATCACTGGCATAGAGTGGAGAGATCCTATGGCAAATTCTGGAGGCAGTTCAAGGTGCCAGACAATGTGGACTTGGATTCTGTCAAGGCTAAGATGGAGAATGGAGTGCTTACTCTCACAATGAACAAGTTGTCACCTGATAAGGTCAAAGGTCCAAGGTTGGTCAGCATTGCAGGGGATGATGAGCAAGCTCCCAAGCTCAAGGGTAATGAAGACAAGCAGGAGCTTTGA
Predicted protein sequences of Glyma16g33130
>Glyma16g33130.1   sequence type=predicted peptide   gene model=Glyma16g33130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHFLVLVPLILLVFAGFPSKAKGSLLPFTNHPNTLLADLWSNHFPDPFRVLEQIPFGVDKDETFTALSSHARVDWKETPEGHVIMLDVPGLKRDEIKIEVEGNRVLRVSGERKREEEKEGDHWHRVERSYGKFWRQFKVPDNVDLDSVKAKMENGVLTLTMNKLSPDKVKGPRLVSIAGDDEQAPKLKGNEDKQEL*






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