SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25370 | AT | Annotation by Michelle Graham. TAIR10: Double Clp-N motif protein | chr4:12972747-12974580 FORWARD LENGTH=238 | SoyBase | E_val: 2.00E-80 | ISS |
| GO:0019538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009532 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| PTHR11638 | Panther | ATP-DEPENDENT CLP PROTEASE | JGI | ISS | |
| PTHR11638:SF62 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF02861 | PFAM | Clp amino terminal domain | JGI | ISS | |
| UniRef100_B9R9N1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent clp protease, putative n=1 Tax=Ricinus communis RepID=B9R9N1_RICCO | SoyBase | E_val: 2.00E-81 | ISS |
| UniRef100_C6TGI2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TGI2_SOYBN | SoyBase | E_val: 7.00E-180 | ISS |
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Glyma16g32900 not represented in the dataset |
Glyma16g32900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g204000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g32900.1 sequence type=CDS gene model=Glyma16g32900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCTTCCACTCTACCCGTTTACTCAACCCCTCTTCCCAAAACCTCTAATTTCTCTCTTCATCTCCTTCCAATGGCTTCCATTCCCACACTCTCTTCAACCCTACCTACACTCTCTGCTCACTCCTTATCCCATTCAAACCCCAACAACCACTGCACTCTCCCTCCCACATCTCTCTTCGGCACCAGGATCACCCTCCTACGCGCCACCTCATCGTCTCATTCCCTCCCCAACACCAATTGCCGTGCAACCTCAGCCACCGTGTCGTTTAGCCTCCCCACCCCGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAGTGGTCGGAGAGGGGTATAAAATCGTATGCAATGGGGGAATTGGAAGCGAGGAAGCTCAAGTATCCAAACACGGGAACCGAGGCGCTTCTCATGGGGATTTTGGTTGAAGGAACAAGTAATGCTGCAAAATTCTTAAGAGCTAATGGAATTACTCTTTTGAAAGTACGTGAAGAAACAGTAGGGCTACTTGGGAAATCCGACTTGTTTTTCTTCAGCCCTGAGCATCCTCCTTTGACTGAACCAGCCCAGAAAGCCCTTGATTGGGCAATTGAGGAAAAATTGAAGTCAGGTGAAGGAGGAGAAATAAACGCTACACATTTACTTCTAGGAATATGGTCTCAAAAAGAATCAGCAGGTCAACAGATCTTGGCTACTCTAGGTTTCAATGATGAAAAAGCCAAAGAACTTGCTAAAACAATTGGTGGTGATGTTTGA
>Glyma16g32900.1 sequence type=predicted peptide gene model=Glyma16g32900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKASTLPVYSTPLPKTSNFSLHLLPMASIPTLSSTLPTLSAHSLSHSNPNNHCTLPPTSLFGTRITLLRATSSSHSLPNTNCRATSATVSFSLPTPKPLSDTPEKTPKWSERGIKSYAMGELEARKLKYPNTGTEALLMGILVEGTSNAAKFLRANGITLLKVREETVGLLGKSDLFFFSPEHPPLTEPAQKALDWAIEEKLKSGEGGEINATHLLLGIWSQKESAGQQILATLGFNDEKAKELAKTIGGDV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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