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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51660 | AT | Annotation by Michelle Graham. TAIR10: cleavage and polyadenylation specificity factor 160 | chr5:20980250-20989268 FORWARD LENGTH=1442 | SoyBase | E_val: 0 | ISS |
| GO:0006378 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA polyadenylation | SoyBase | N/A | ISS |
| GO:0006379 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA cleavage | SoyBase | N/A | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1896 | KOG | mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) | JGI | ISS | |
| PTHR10644 | Panther | DNA REPAIR/RNA PROCESSING CPSF FAMILY | JGI | ISS | |
| PTHR10644:SF2 | Panther | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR | JGI | ISS | |
| PF03178 | PFAM | CPSF A subunit region | JGI | ISS | |
| UniRef100_B9R9N0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cleavage and polyadenylation specificity factor cpsf, putative n=1 Tax=Ricinus communis RepID=B9R9N0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233B069 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233B069 related cluster n=1 Tax=unknown RepID=UPI000233B069 | SoyBase | E_val: 0 | ISS |
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Glyma16g32890 not represented in the dataset |
Glyma16g32890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g28030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g203900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g32890.1 sequence type=CDS gene model=Glyma16g32890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTTTGCGGCGTACAAGATGATGCAGTGCCCCACCGGCATCGACAACTGCGCCGCCGGGTTCCTCACCCACTCCCGCTCTGACTTCGTCCCTCTCCAGCCCGACGACCTCGACGCCGAGTGGCCCTCCCGCCCCCGCCACCACGTCGGCTCCCTCCCCAACCTCGTCGTCACCGCCGCCAACGTCCTCGAAGTCTACGCCGTCCGCCTCCAGGAGGACCAGCCGCCCAAGGCCGCCGCCGACTCCCGCCGCGGCGCCCTCCTCGACGGCATTGCCGGGGCCTCCCTCGAACTCGTGTGCCACTACAGGTTGCATGGTAATGTTGAAACCATGGCTGTTTTGAGCATTGGAGGTGGTGATGTTTCTAGGAGGAGAGATTCTATCATGTTAACTTTTGCAGATGCAAAGATTTCAGTTCTTGAGTATGATGATTCTATTCACGGACTTCGTACTAGTTCTTTGCATTGTTTTGAGGGTCCTGAATGGCTTCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCAGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGTGGAGTTCTTATCTATGATTTGCAAATGATAATACTAAAGGCTACTCAGGCTGGTTCTGGTTTAGTTGGGGAGGATGATGCCTTGGGATCTTCAGGAGCAGTTGCTGCTCGTATTGAGTCATCTTATATGATAAACCTACGTGACTTGGATATGAGGCATGTAAAAGATTTTACGTTTGTTCATGGCTATATTGAACCTGTAATGGTGATTTTGCATGAACGTGAACTCACTTGGGCCGGGCGTGTCTCATGGAAGCATCATACTTGCATGATATCAGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTTCCCCATGATGCGTACAAGCTTCTTGCAGTGCCCTCGCCAATAGGTGGTGTTCTTGTAATTAGTGCTAACACTATTCATTATCACAGTCAGTCTGCTTCTTGTGCATTGGCCTTGAACAGTTATGCTGTTACACTTGACAGTAGTCAAGAGATACCAAGATCAAGTTTCAATGTGGAGCTTGATGCTGCCAATGCAACTTGGTTGTTAAGTGATGTGGCCTTGCTGTCAACAAAAACTGGTGAACTGCTATTGCTTACGCTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACAACAATTGGAAATTCTCTGTTTTTCCTCGCCAGTCGGTTAGGGGACAGTATGCTAGTGCAATTTTCTTGTGGATCAGGTGTTTCCATGTTGTCATCCAATCTAAAAGAAGAGGTTGGTGATATTGAAGCAGATGCTCCATCAAAGAGATTGCGAAGGTCTCCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGGTCTGCTCCAAATAGAACAGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTCTCATATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAAAATGGTTCTCTTTGTGTTTTGCGGCAATCAATTCGCCCAGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGCTCTCATAATGCTGATTCTTCTAAGATGGCTGATGACGATGATGAGTATCATGCTTACCTTATTATTAGTTTGGAGGCTCGTACTATGGTACTAGAAACTGCTGATCTTCTGAGTGAGGTTACTGAAAGTGTGGACTACTATGTTCAAGGAAAAACACTTGCTGCGGGGAATTTATTTGGAAGGTGTCGAGTTATCCAAGTCTATGAACGTGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGATGTAAGCTTTGGAGCTTCTAATTTGGAATCTGGTTCTGCATCTGACAGTGCTATAGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTGCTCAGGATGAGTGATGGAAGTATTCGACTTCTGATTGGAGATCCTAGTACCTGCACTATCTCTGTCACTTCTCCAGCTTCATTTGAGAGCTCCAAGGGATCAGTTTCTTCATGTACACTGTACCATGATAAAGGACCTGAGCCTTGGCTGAGGAAAACTAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGACTATTGATGGCACTGATGGTGCAGCTCAGGATCATGGGGATATTTATTGTGTTGTTTGTTTTGATAATGGTAACCTTGAAATATTTGATGTCCCCAATTTCAATTGTGTCTTTTCTGTGGAAAATTTTATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGATGAAAGAGGTACTGAAAGATTCTAAACAAGGGGATAGAGATGGAGTGATCAACCAAGGGAGGAAGGAAAATATACCGGATATGAAGGTTGTAGAGTTGGCCATGCAGAGATGGTCTGGGCAGCATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACTATTCTTTGTTACCATGCTTACCTTTATGAAAGTCCAGATAGTACTTCTAAAGTTGAGGATTCAGCATCAGCCGGAGGATCCATTGGCCTTAGCAGTACCAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCTTTGGATGCATATGCCAGGGAGGATACATCAAATGGACCACCTTGTCAACAAATTACTATTTTCAAGAATATTGGTAGTTATGAAGGATTCTTCCTATCAGGGTCAAGACCAGCTTGGGTTATGGTGTTGAGGGAACGACTTCGTGTTCATCCACAGCTATGTGATGGGTCTATTGTTGCTTTTACTGTCCTTCACAACGTGAACTGCAATCAAGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAAATTCCACTAAAAGCCACACCACACCAAGTAACATACTTTGCGGAGAAGAACTTATATCCACTTATTGTCTCATTTCCTGTTCTTAAGCCACTAAATCAAGTTATTTCTCTGGTTGACCAAGATATCAACCATCAAAATGAGAGTCAGAATATGAATCCTGATGAGCAAAACCGCTTTTATCCTATTGATGAATTTGAGGTTCGTATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACTAAGGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTTACTGTGAGGATGGTTACTTTAGTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGTACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGTATCCTATTGTTCTCTTTGGGGAAAAATACTGATAATCCACAAACTCTGGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCTCTTCAAGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGATGCACCACCATTACATGTTGTGAGCTTAAATATTGTAAAGAACTTCATCCTTATTGGCGATATCCATAAAAGCATATACTTTCTTAGTTGGAAAGAGCAGGGTGCTCAATTGAGCTTATTAGCCAAGGATTTTGGCTCTCTCGATTGTTTTGCGACAGAATTCTTGATTGATGGAAGTACTCTCAGTCTCATGGTTTCAGATGATAATAGAAACATCCAGATTTTTTACTATGCCCCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCCCATGTGACTAAATTCTTAAGGTTGCAAATGTTATCCACTTCGGATCGAGCTGGTGCTGTACCAGGCTCAGATAAAACCAATCGTTTTGCCTTATTATTTGGTACCTTGGATGGAAGTATTGGTTGCATTGCGCCTCTTGATGAAATCACATTTCGCAGACTGCAGTCTTTGCAGAGAAAACTTGTTGATGCTGTACCCCATGTCGCTGGCCTGAACCCCAGAGCTTTTAGACTATTTCGGTCAAATGGAAAGGCCCATCGGCCTGGCCCTGACAGTATAGTTGATTGTGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCACCAGGTTGGAACAACTCGATCACAAATTCTGTCAAATCTAAGTGATCTGTCTCTTGGAACAAGCTTCTTGTGA
>Glyma16g32890.1 sequence type=predicted peptide gene model=Glyma16g32890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSFAAYKMMQCPTGIDNCAAGFLTHSRSDFVPLQPDDLDAEWPSRPRHHVGSLPNLVVTAANVLEVYAVRLQEDQPPKAAADSRRGALLDGIAGASLELVCHYRLHGNVETMAVLSIGGGDVSRRRDSIMLTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGVLIYDLQMIILKATQAGSGLVGEDDALGSSGAVAARIESSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVISANTIHYHSQSASCALALNSYAVTLDSSQEIPRSSFNVELDAANATWLLSDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSGVSMLSSNLKEEVGDIEADAPSKRLRRSPSDALQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKMADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRCRVIQVYERGARILDGSFMTQDVSFGASNLESGSASDSAIALSVSIADPFVLLRMSDGSIRLLIGDPSTCTISVTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGETIDGTDGAAQDHGDIYCVVCFDNGNLEIFDVPNFNCVFSVENFMSGKSHLVDALMKEVLKDSKQGDRDGVINQGRKENIPDMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDSTSKVEDSASAGGSIGLSSTNVSRLRNLRFVRVPLDAYAREDTSNGPPCQQITIFKNIGSYEGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNQGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDINHQNESQNMNPDEQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLVNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKNTDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDNRNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGAVPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPRAFRLFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQVGTTRSQILSNLSDLSLGTSFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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