SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51710 | AT | Annotation by Michelle Graham. TAIR10: K+ efflux antiporter 5 | chr5:21004566-21008580 REVERSE LENGTH=565 | SoyBase | E_val: 0 | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion transport | SoyBase | N/A | ISS |
| GO:0006814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transport | SoyBase | N/A | ISS |
| GO:0010351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lithium ion transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0015079 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015299 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity | SoyBase | N/A | ISS |
| GO:0015386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium:hydrogen antiporter activity | SoyBase | N/A | ISS |
| KOG1650 | KOG | Predicted K+/H+-antiporter | JGI | ISS | |
| PTHR16254 | Panther | POTASSIUM/PROTON ANTIPORTER-RELATED | JGI | ISS | |
| PF00999 | PFAM | Sodium/hydrogen exchanger family | JGI | ISS | |
| UniRef100_B9I4I9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Potassium efflux antiporter n=2 Tax=Populus trichocarpa RepID=B9I4I9_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EEF9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EEF9 related cluster n=1 Tax=unknown RepID=UPI000233EEF9 | SoyBase | E_val: 0 | ISS |
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Glyma16g32821 not represented in the dataset |
Glyma16g32821 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g27940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g203200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g32821.1 sequence type=CDS gene model=Glyma16g32821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGACGGCGATTCTGGCCACGAAGAAACGGCGCGCGTTTGGGCTCTGGTGCTGCGTTTTGTGCCTCGCGATCTGCGCTAGGGTTTGCGGCGCGGCCAGATCCGACCAGGAAACGCGGGAGAGGTTCTACGGGAACATGCCCAATGGCTCGTCGCCCGAATCCAACAACACCTTGGCCAAGATGTTCGATCGCGTTCTCGAGAAGGAGTTCTCCGAGAATGACCAACCCGAAGAACCTGACAAAAACAGCTTCAATAGCAGTGTAGCTGATCAGCAGGCTGTATTGGAGACTGTAGCTAAAATTACTCATGATAAAGCAAAGAGAAATGAAACACATGAGGGAAATGCCACAAGAGCATTTCAGTTTCAAGATGTGTTCTCACTGGAAAATGAAGATTCTGATGATGTGACAACTTTGATTGACAAAAAGGACAATGTCTTTGTGATGTCAAACAAGAAATCCAAATATCCTGTGCTTCAAGTGGATTTGAGGCTAATATCGGATTTGGTGGTTGTCATAGTTTCTGCAGCCATTGGTGGAATTGTCTTTTCCTGTTTGGGGCAACCGGTTATTGTGGGCTATCTTCTTGCAGGCTCCCTTATTGGACCAGGCGGTTTGAAGTTCATAAGTGAAATGGTGCAGGTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAGTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTACTTCAAATTATCATTTTTATGTTCATGTGTGGCATTCTTTCCATGTTATTTGGAGCCAAATTGTCTGAGGGTGTTTTTGTCGGTTCCTTTCTGTCAATGTCATCTACAGCAGTGGTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGGATTGTGCAGTGGGTTTACTATTTGCTTTGCTCCCAGTTTTGGGTGGTAACAGTGGCCTTTTACAAGGACTAATGTCAATGGGAAAACTGTTGCTAGTGTTGTCTTTGTATATCACTGCTACATCTGTATTGTCTTGGACATTTGTTCCTCGCTTTCTTAAACTGATGATGCGGCTGTCATCTCAGACAAATGAACTTTATCAGCTAGCTGCTGTTGCTTTCTGCTTGTTATCAGCATGGTGCAGTGATAAGCTTGGCCTTAGTCTTGAGTTGGGTTCGTTTATGGCTGGTGTTATGATTTCCACAACAGACTTTGCTCAACATACTTTGGACCAGGTGGAACCAATTCGTAACCTATTTGCAGCTCTCTTTCTCTCAAGTATTGGAATGCTCATACATGTGCACTTCCTTTGGAACCATGTGGATATTTTGTTGGCATCTGTTATTCTGGTTGTAGTTGTTAAAACTGCTGTTGCTGTTATAGTTACAAAGGCCTTCGGATATAGCCTTAAGACATCATTTATTGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAGGGGAAAATGTATCTTCTTCTTCTGGGGACAACGGCTCTCAGTCTGGTTACAACTCCACTTTTGTTTAAATTGATTCCTGCTGTCATGAATCTGGGTGTTCTCATGCACTGGTTCCCCAATGAAAGTAGCACACAAATTGAGGGAAAAACTTCAGTGATTGAAGCAAACAGAATGTTGTGA
>Glyma16g32821.1 sequence type=predicted peptide gene model=Glyma16g32821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTAILATKKRRAFGLWCCVLCLAICARVCGAARSDQETRERFYGNMPNGSSPESNNTLAKMFDRVLEKEFSENDQPEEPDKNSFNSSVADQQAVLETVAKITHDKAKRNETHEGNATRAFQFQDVFSLENEDSDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIVFSCLGQPVIVGYLLAGSLIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLAKLKAVGPVAVLGGLLQIIIFMFMCGILSMLFGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSNNALHVQVTIGTLIFQDCAVGLLFALLPVLGGNSGLLQGLMSMGKLLLVLSLYITATSVLSWTFVPRFLKLMMRLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVVVVKTAVAVIVTKAFGYSLKTSFIVGISLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPAVMNLGVLMHWFPNESSTQIEGKTSVIEANRML*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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