SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55830 | AT | Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein | chr3:20715101-20717133 FORWARD LENGTH=334 | SoyBase | E_val: 9.00E-124 | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0010087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0031227 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| GO:0035251 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity | SoyBase | N/A | ISS |
| PTHR11062 | Panther | EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED | JGI | ISS | |
| PTHR11062:SF23 | Panther | JGI | ISS | ||
| PF09258 | PFAM | Glycosyl transferase family 64 domain | JGI | ISS | |
| UniRef100_I1MQ61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQ61_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LY62 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleotide-diphospho-sugar transferase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LY62_ARATH | SoyBase | E_val: 4.00E-121 | ISS |
|
Glyma16g32650 not represented in the dataset |
Glyma16g32650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g27660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g201600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g32650.1 sequence type=CDS gene model=Glyma16g32650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCAACCTCGTTCAGATTCGCGTCGCCGCCGACGCTAGCGATGGCTTCGACTCTCCGGCGAAGCAGAAAGCAGCCAACCGCAGCTCCTACAGCAATCGCCCCTTTCTCTCCCTCCGCCGCGCCAAACAGTTCCTCGGCGCCGCCAAGTTCAAGCTCTTCTTAGTTCTTTTTGCTCTCTCCATCGTCGTTTTTGTCTCCTCCAGACTCAGTTCGTGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAACAAACTGTTGCTCATTATGCATCCTGTCGAAGTGCTGAAGCAATACATGTGGTGTGGAGTGAAAGTGAACAACCATCCGAGAGGCTTAAAACATATCTGAATAAGATTGTGGTTTTGAAGTCTCAGAAAGCTCATAAACCAAACTTTAGATTTGACATCAATGCAGATGGTGAGCCAAACAGCAGGTTTAAGCCAATAAAGAACCTCAAGACAGATGCAATTTTCTCAGTTGATGATGATGTGGTTGTTCCATGCTCTACTCTAGATTTTGCTTTCTCTGTCTGGCAAAGTGCACCATTTACGATGGTGGGATTTGTTCCTCGAATTCACTGGCTGGATAAGGAGCAAAACAATGCTGCATATTACAGGTATGGAGGATGGTGGTCTGTTTGGTGGACAGGCACTTATAGCATGGTTCTCTCAAAGGCTGCATTCTTTCACAGGAAATACTTGGATTTATATACTCACGAGATGTCTCCATCAATTCAGGACTATGTTTCCAGGGAGAGAACTTGTGAAGACATTGCAATGTCCCTTTTTGTTGCTAATGCCACAAGTGGTCCTCCAATATGGGTGAAAGGCAAAATCTATGAGATTGGCGCATCAGCTATTAGCAGTCTGAGAGGGCATAGCCACAGGAGAAGCAAATGTCTCAATGACTTGATATCACTTTACGGAACTCTTCCACTTGTATCAACTAATGTGAAAGCAGTTAGCGCTAGAAATGAATGGTTATGGTAG
>Glyma16g32650.1 sequence type=predicted peptide gene model=Glyma16g32650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNLVQIRVAADASDGFDSPAKQKAANRSSYSNRPFLSLRRAKQFLGAAKFKLFLVLFALSIVVFVSSRLSSWMGWNPHHSSSVSSTSRGGYTVLINTWRHKSLLKQTVAHYASCRSAEAIHVVWSESEQPSERLKTYLNKIVVLKSQKAHKPNFRFDINADGEPNSRFKPIKNLKTDAIFSVDDDVVVPCSTLDFAFSVWQSAPFTMVGFVPRIHWLDKEQNNAAYYRYGGWWSVWWTGTYSMVLSKAAFFHRKYLDLYTHEMSPSIQDYVSRERTCEDIAMSLFVANATSGPPIWVKGKIYEIGASAISSLRGHSHRRSKCLNDLISLYGTLPLVSTNVKAVSARNEWLW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
