SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62180 | AT | Annotation by Michelle Graham. TAIR10: carboxyesterase 20 | chr5:24978866-24979849 REVERSE LENGTH=327 | SoyBase | E_val: 1.00E-64 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| PTHR23024 | Panther | MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES | JGI | ISS | |
| PTHR23024:SF10 | Panther | CARBOXYLESTERASE-RELATED | JGI | ISS | |
| PF07859 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| UniRef100_G7ID32 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CXE carboxylesterase n=1 Tax=Medicago truncatula RepID=G7ID32_MEDTR | SoyBase | E_val: 1.00E-83 | ISS |
| UniRef100_UPI000233ED8D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ED8D related cluster n=1 Tax=unknown RepID=UPI000233ED8D | SoyBase | E_val: 1.00E-173 | ISS |
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Glyma16g32571 not represented in the dataset |
Glyma16g32571 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g27550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g32571.1 sequence type=CDS gene model=Glyma16g32571 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGATAGTTTTCAAACATTCAACCATGATGCCCTTCTTCTCTTTCACACACTACAAATCCTTTTGGAGATCTTCAATTGCATTTGCATTTGCATTTGCATTTTTCTTAACCTTTCTCTTGATTGCAAACTCACTCACTCTCCAAACCCAATCCACTACAATCCCATGCAACAAAGACCCCTACAAGGAACTAAACCTTATCCCTAACCCAAACGGCACCGTCACGCGCCCCAACAAACCCCCCCAGAGCCCGCCCGCACCGGATCCCAACCTCAACACCCTCGTACTCTCCAAAGACCTCTCCATCAACCAATCAAAAAGCACATGGGCGAGGGTCTACCTACCCCGCGTAGCACTGGATCACAGCTCCAAACTCCCGTTATTGGTTTTCTTCCATGGTGGCGGCTTCATTTTCCTCAGTGCGGCCTCAACAATCTTCCACGATTTTTGCTTCAACATGGCAAACGACGTCGTTGCGGTCGTTGCGTCCATCGAATACCGTCTCGCACCGGAACACAGACTCCCCGCGGCGTACGAGGATGCCGTGGAGGCGCTGCAGTGGATCAAAACCAACCGAGATGATTGGCTGACAAACTACGTCGATTACTCCAACGTTTTTCTCATGGGGAGTAGTGCCGGGGGAAACATAGCCTACAACGCGGGTCTACATGCAGCCGCGGTTGATGAAAATCAGATTCCTAAGATCCAAGGGCTTATTTTGGTTCAACCGTTTTTCAGTGGACCCGCAGGACAGGTTCGGAGCTGA
>Glyma16g32571.1 sequence type=predicted peptide gene model=Glyma16g32571 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMIVFKHSTMMPFFSFTHYKSFWRSSIAFAFAFAFFLTFLLIANSLTLQTQSTTIPCNKDPYKELNLIPNPNGTVTRPNKPPQSPPAPDPNLNTLVLSKDLSINQSKSTWARVYLPRVALDHSSKLPLLVFFHGGGFIFLSAASTIFHDFCFNMANDVVAVVASIEYRLAPEHRLPAAYEDAVEALQWIKTNRDDWLTNYVDYSNVFLMGSSAGGNIAYNAGLHAAAVDENQIPKIQGLILVQPFFSGPAGQVRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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