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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma16g32500

Feature Type:gene_model
Chromosome:Gm16
Start:35647927
stop:35652132
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62170AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 381 Blast hits to 359 proteins in 81 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink). | chr5:24973115-24975475 REVERSE LENGTH=703 SoyBaseE_val: 4.00E-69ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q01HW3UniRef Annotation by Michelle Graham. Most informative UniRef hit: B0616E02-H0507E05.9 protein n=2 Tax=Oryza sativa RepID=Q01HW3_ORYSA SoyBaseE_val: 2.00E-10ISS
UniRef100_UPI000233ED8CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233ED8C related cluster n=1 Tax=unknown RepID=UPI000233ED8C SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g32500 not represented in the dataset

Glyma16g32500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma09g27410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g200400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma16g32500.2   sequence type=CDS   gene model=Glyma16g32500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCAAGGAGTGGTATTTTGCTGGAAGATCATCTAAGAGAGGTGTAGGAGGAGGTGCTGAGGCTGAAACACAAGCCCCTTCTGGTTGCATGTGTGCTGTTTTTCAGTTCTTTGATTTCCATCCTTTTCACTTTCCCAACATAAACCAACAACACCAACAAGATCAACAAGCCTCTTTTAAGCCACCCTCATGCACCTCAGAAGACCACACCACAGTCTCAAAAGGTGCTGAAGCACCTAGGAACAGCTTAGAGGCAGAGGATGGTGATGGTACAGTTTCATCTCTCTCATCAAAAGAAGATGATTTTAAAATTCCTAAGAATATTATACAAATTAAGACAAGTGGAGCCACAAGAACAAGTGGTGGAAATTTGAATGACTTGTCCTCAGAACTCACCAGCTCTCCAGGGACAAAGACACCAACTTTAGTGGCAAGGTTAATGGGTTTGGATCTTCTTCCAGGTGCAAACTCACCCTCTTTTTCTTCTTCATGTCTTTCAACTCCAAACACACAAGACAATGTGCCACATCTTCACCACCACCTGAGGCACAAGCAACATGTCCAAACCAAGCACAGGAACAGCGTAGATAGTAGTGACATTTCAGCCACAAGATCTTTGCCTGAGACACCAAGAATCTCCTCAGCAAGAAGATCAGATGTTGATCATCACCACAGACTCTCACTCCAAATCATAAAGGAAAACATGAACCTTGGTGAGGATTTGGAGCTCCCTAGGCTCTCATTTTCCAAAAGGAAGAGTGATGAGAACAATGGCAGGAGTCCAAGCCACTATGCCAGGCAAATTGTCAAACAGGCTAAGGAAAGTGTGAGCAGAAAAGTTGGGCAAGACATCACCAACACAACTCTCAAAGCAAGAGAAGAAAATGCAGGCCAATTCAGAAGCAAAAAGTCTCCCAAAACATCATCACTGAAAGCAATTGATGAAACTGAAACCAGCCCAAATAAACACTCAAACCAATCTTCCTACTCCCCAAGGCTTAGATTCATTGACAAACACAAACCAAGCACAACAACAACATCAACAGCACCATCACCACTCACCCCAAAAGATCAAAACATGCTGAAACTACCACCACCTCCTTCTCCAGTTAACACTCACCAACCTCAGCTTCCAAGAGTTTTAACAAAACCAAAGCTTCAAGCAGTGGTGCCAGAACAGAAAGAGTTTCATCAGAACAACAAATCTGTTCCAAAATGCAAAAAGGCTACCAATGAAAAAAAGTTCAACTCAAGGCTCATCAAAAGGCCTCCACAGACATCAGACATCATCAGAAACAAGCAAGAAGAACCATTCATCATTCGTCCCACATCGCCTACTAGAGCCAGTGACATCAAAAACACCAAAAGCAAGAAAAATCATCCATTGTCAAGCAATCTCCTCAACAACATCAGCAATGTACCAAATCTTCTACCTGTCAAGACAGACCCTTCTCCTTCGGCAACCAAAATTCCTTCCAAACAGTCACAGGTCTGTGATAGTCGTCATCAAGAGTCCAAAAGCAGTTCACAGTTATCTAGTTGTGCGCGCCAGAGGTACAAACAAGAAGAAACAACAACCACACTACTCGCTACCCGAGATAACAACGGTGCCTTCTTCTCCTCCTCCACCGTCACCCACCCTCCCACCCCACAAGAGCTTCAGTACATCACAGCAATCCTTGCACGTACCACTGCCCTAAACTCACAGGGTACCCCCACTACAGTTTCCTTAAACCAGCCCCTCGACCCATCAATCTTCCACCACCTCGAACACCCCGCCGGCGACAAAGATCGCAACTTTGCCCCGAAAGACCAACTGGGTCACCGTTGGAATCGGAGATTACTGTTCGATTTGGTTGACGAGGTTCTGAGGGAGATTCTGGAGTCTCAAGAGGGAGAGAGAGAAAAGAGGCTTTGGTTTTTGAAGGGTGGTATTTGTAACCAAAGAGGGAGGAGCGTTGAAGGGTTGGTGAAGAGGGTGTGGAAGAGGGTTGAGGAGTTCCCACGTGCCAAGTGTGAGGTGTTGGAGGACATTGATGAGTTGATTGACCTGCAGAGAGAGAAAGATGGTGAGAGAATGGAAGAAGAAGGGGAAGAACTGGTTGCAGAGATTGAAGGGAACATATGGGACACGTTAGTCCATGAAACGGTTATAGTTATGGATTGTTGGGAAAATGCTAAAAAAGAAAAATTATTACTATATGATGATTCCAAAATATCATCACATGTTTGCAGTCTCAGTCAATTTTAA

>Glyma16g32500.2   sequence type=predicted peptide   gene model=Glyma16g32500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKEWYFAGRSSKRGVGGGAEAETQAPSGCMCAVFQFFDFHPFHFPNINQQHQQDQQASFKPPSCTSEDHTTVSKGAEAPRNSLEAEDGDGTVSSLSSKEDDFKIPKNIIQIKTSGATRTSGGNLNDLSSELTSSPGTKTPTLVARLMGLDLLPGANSPSFSSSCLSTPNTQDNVPHLHHHLRHKQHVQTKHRNSVDSSDISATRSLPETPRISSARRSDVDHHHRLSLQIIKENMNLGEDLELPRLSFSKRKSDENNGRSPSHYARQIVKQAKESVSRKVGQDITNTTLKAREENAGQFRSKKSPKTSSLKAIDETETSPNKHSNQSSYSPRLRFIDKHKPSTTTTSTAPSPLTPKDQNMLKLPPPPSPVNTHQPQLPRVLTKPKLQAVVPEQKEFHQNNKSVPKCKKATNEKKFNSRLIKRPPQTSDIIRNKQEEPFIIRPTSPTRASDIKNTKSKKNHPLSSNLLNNISNVPNLLPVKTDPSPSATKIPSKQSQVCDSRHQESKSSSQLSSCARQRYKQEETTTTLLATRDNNGAFFSSSTVTHPPTPQELQYITAILARTTALNSQGTPTTVSLNQPLDPSIFHHLEHPAGDKDRNFAPKDQLGHRWNRRLLFDLVDEVLREILESQEGEREKRLWFLKGGICNQRGRSVEGLVKRVWKRVEEFPRAKCEVLEDIDELIDLQREKDGERMEEEGEELVAEIEGNIWDTLVHETVIVMDCWENAKKEKLLLYDDSKISSHVCSLSQF*







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