SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62170 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 381 Blast hits to 359 proteins in 81 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink). | chr5:24973115-24975475 REVERSE LENGTH=703 | SoyBase | E_val: 4.00E-69 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_Q01HW3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: B0616E02-H0507E05.9 protein n=2 Tax=Oryza sativa RepID=Q01HW3_ORYSA | SoyBase | E_val: 2.00E-10 | ISS |
| UniRef100_UPI000233ED8C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ED8C related cluster n=1 Tax=unknown RepID=UPI000233ED8C | SoyBase | E_val: 0 | ISS |
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Glyma16g32500 not represented in the dataset |
Glyma16g32500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g27410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g200400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g32500.2 sequence type=CDS gene model=Glyma16g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAAGGAGTGGTATTTTGCTGGAAGATCATCTAAGAGAGGTGTAGGAGGAGGTGCTGAGGCTGAAACACAAGCCCCTTCTGGTTGCATGTGTGCTGTTTTTCAGTTCTTTGATTTCCATCCTTTTCACTTTCCCAACATAAACCAACAACACCAACAAGATCAACAAGCCTCTTTTAAGCCACCCTCATGCACCTCAGAAGACCACACCACAGTCTCAAAAGGTGCTGAAGCACCTAGGAACAGCTTAGAGGCAGAGGATGGTGATGGTACAGTTTCATCTCTCTCATCAAAAGAAGATGATTTTAAAATTCCTAAGAATATTATACAAATTAAGACAAGTGGAGCCACAAGAACAAGTGGTGGAAATTTGAATGACTTGTCCTCAGAACTCACCAGCTCTCCAGGGACAAAGACACCAACTTTAGTGGCAAGGTTAATGGGTTTGGATCTTCTTCCAGGTGCAAACTCACCCTCTTTTTCTTCTTCATGTCTTTCAACTCCAAACACACAAGACAATGTGCCACATCTTCACCACCACCTGAGGCACAAGCAACATGTCCAAACCAAGCACAGGAACAGCGTAGATAGTAGTGACATTTCAGCCACAAGATCTTTGCCTGAGACACCAAGAATCTCCTCAGCAAGAAGATCAGATGTTGATCATCACCACAGACTCTCACTCCAAATCATAAAGGAAAACATGAACCTTGGTGAGGATTTGGAGCTCCCTAGGCTCTCATTTTCCAAAAGGAAGAGTGATGAGAACAATGGCAGGAGTCCAAGCCACTATGCCAGGCAAATTGTCAAACAGGCTAAGGAAAGTGTGAGCAGAAAAGTTGGGCAAGACATCACCAACACAACTCTCAAAGCAAGAGAAGAAAATGCAGGCCAATTCAGAAGCAAAAAGTCTCCCAAAACATCATCACTGAAAGCAATTGATGAAACTGAAACCAGCCCAAATAAACACTCAAACCAATCTTCCTACTCCCCAAGGCTTAGATTCATTGACAAACACAAACCAAGCACAACAACAACATCAACAGCACCATCACCACTCACCCCAAAAGATCAAAACATGCTGAAACTACCACCACCTCCTTCTCCAGTTAACACTCACCAACCTCAGCTTCCAAGAGTTTTAACAAAACCAAAGCTTCAAGCAGTGGTGCCAGAACAGAAAGAGTTTCATCAGAACAACAAATCTGTTCCAAAATGCAAAAAGGCTACCAATGAAAAAAAGTTCAACTCAAGGCTCATCAAAAGGCCTCCACAGACATCAGACATCATCAGAAACAAGCAAGAAGAACCATTCATCATTCGTCCCACATCGCCTACTAGAGCCAGTGACATCAAAAACACCAAAAGCAAGAAAAATCATCCATTGTCAAGCAATCTCCTCAACAACATCAGCAATGTACCAAATCTTCTACCTGTCAAGACAGACCCTTCTCCTTCGGCAACCAAAATTCCTTCCAAACAGTCACAGGTCTGTGATAGTCGTCATCAAGAGTCCAAAAGCAGTTCACAGTTATCTAGTTGTGCGCGCCAGAGGTACAAACAAGAAGAAACAACAACCACACTACTCGCTACCCGAGATAACAACGGTGCCTTCTTCTCCTCCTCCACCGTCACCCACCCTCCCACCCCACAAGAGCTTCAGTACATCACAGCAATCCTTGCACGTACCACTGCCCTAAACTCACAGGGTACCCCCACTACAGTTTCCTTAAACCAGCCCCTCGACCCATCAATCTTCCACCACCTCGAACACCCCGCCGGCGACAAAGATCGCAACTTTGCCCCGAAAGACCAACTGGGTCACCGTTGGAATCGGAGATTACTGTTCGATTTGGTTGACGAGGTTCTGAGGGAGATTCTGGAGTCTCAAGAGGGAGAGAGAGAAAAGAGGCTTTGGTTTTTGAAGGGTGGTATTTGTAACCAAAGAGGGAGGAGCGTTGAAGGGTTGGTGAAGAGGGTGTGGAAGAGGGTTGAGGAGTTCCCACGTGCCAAGTGTGAGGTGTTGGAGGACATTGATGAGTTGATTGACCTGCAGAGAGAGAAAGATGGTGAGAGAATGGAAGAAGAAGGGGAAGAACTGGTTGCAGAGATTGAAGGGAACATATGGGACACGTTAGTCCATGAAACGGTTATAGTTATGGATTGTTGGGAAAATGCTAAAAAAGAAAAATTATTACTATATGATGATTCCAAAATATCATCACATGTTTGCAGTCTCAGTCAATTTTAA
>Glyma16g32500.2 sequence type=predicted peptide gene model=Glyma16g32500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKEWYFAGRSSKRGVGGGAEAETQAPSGCMCAVFQFFDFHPFHFPNINQQHQQDQQASFKPPSCTSEDHTTVSKGAEAPRNSLEAEDGDGTVSSLSSKEDDFKIPKNIIQIKTSGATRTSGGNLNDLSSELTSSPGTKTPTLVARLMGLDLLPGANSPSFSSSCLSTPNTQDNVPHLHHHLRHKQHVQTKHRNSVDSSDISATRSLPETPRISSARRSDVDHHHRLSLQIIKENMNLGEDLELPRLSFSKRKSDENNGRSPSHYARQIVKQAKESVSRKVGQDITNTTLKAREENAGQFRSKKSPKTSSLKAIDETETSPNKHSNQSSYSPRLRFIDKHKPSTTTTSTAPSPLTPKDQNMLKLPPPPSPVNTHQPQLPRVLTKPKLQAVVPEQKEFHQNNKSVPKCKKATNEKKFNSRLIKRPPQTSDIIRNKQEEPFIIRPTSPTRASDIKNTKSKKNHPLSSNLLNNISNVPNLLPVKTDPSPSATKIPSKQSQVCDSRHQESKSSSQLSSCARQRYKQEETTTTLLATRDNNGAFFSSSTVTHPPTPQELQYITAILARTTALNSQGTPTTVSLNQPLDPSIFHHLEHPAGDKDRNFAPKDQLGHRWNRRLLFDLVDEVLREILESQEGEREKRLWFLKGGICNQRGRSVEGLVKRVWKRVEEFPRAKCEVLEDIDELIDLQREKDGERMEEEGEELVAEIEGNIWDTLVHETVIVMDCWENAKKEKLLLYDDSKISSHVCSLSQF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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