SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16110 | AT | Annotation by Michelle Graham. TAIR10: response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664 | SoyBase | E_val: 1.00E-52 | ISS |
| GO:0000160 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009735 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus | SoyBase | N/A | ISS |
| GO:0009736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0010150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf senescence | SoyBase | N/A | ISS |
| GO:0031537 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin metabolic process | SoyBase | N/A | ISS |
| GO:0048831 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of shoot development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000156 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR26402 | Panther | RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM | JGI | ISS | |
| PTHR26402:SF51 | Panther | JGI | ISS | ||
| PF00072 | PFAM | Response regulator receiver domain | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| UniRef100_G7L033 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR1 n=1 Tax=Medicago truncatula RepID=G7L033_MEDTR | SoyBase | E_val: 8.00E-83 | ISS |
| UniRef100_I1MQ25 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MQ25_SOYBN | SoyBase | E_val: 3.00E-149 | ISS |
|
Glyma16g32311 not represented in the dataset |
Glyma16g32311 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g27151 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g198800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g32311.1 sequence type=CDS gene model=Glyma16g32311 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACACATGAGAGAGTTGATATCATCAGTGTTTTGGTTGTGGATGACGATAAAACTTCTTTGGCCATTGTTAGCAATATACTCACCTCATTAGGATACAAAGTTCTCACTGCCAACAGTGCCCTAAATGCTTTGGAGATTCTTAGAGAGTTCAGAGGCTTTATTGATCTCCTCATTACAGAACTTCATATATCTGGGATGAATGGATTTGAATTTCAAAAGTATGTTGAAAATCAATTCCACTTACCCGTGATAATTATGTCTTCAGATGGAAGAAATAGTGTAATTTCCAAGAGTTTAGCAAATGGTGCCGCACACTATATTTTGAAACCCTTTTCTGCAGATGACTTCAAAGACATTTGGCAGTATGCAAGGAAACTAACTTTTCAAAATATTGAAGGGGGGTCAATACCAGGTGATAACACTTCTATTCAGGATGTTCACTCTGCAATATCATCGAATGTGAGCAAGAGAAAAAGGAAGTGTTTCCCAAGAAAGAGTACCCAAATGAATAAGGAAGGCCAAAGTGGAGAAAGCTCTACGCTTGTAAAGAAACCAAAGGTTGTTTGGACACCATATCTTCACAACCGCTTTCTGCTTGCCATAAAACAAATTGGATTGGAGAAGGCTGTTCCAAAGACAATTCTTCAAGTCATGAATGTGCCAAACTTGACAAGAGAAAATGTTGCCAGTCACTTACAGAAGTATCGCATATTCCTGCGAAAAGTAGCAGATAAAGGATTGCTTGAGGGCTTATCTAACAGGGATCTAAGGTCAAGGTTTGCCTATGGCCTTTCAGCATCAATGATCAAAGACATCCAAGCAAAAACTGCGAAGTCGCGTGTTACTGCGCAGCAATATATGAAAAGAATAGCACATCAATCAGTGTATGGAGGAATAGCCAATGCTGTTAAATCTTACAACCATGTTTCAAGTGTGACTAATACTCCACTTGGAAGAAGCCATCAATTTCCCCATCCATATCACAAAGGCTTGAATATGATGCTTCACAACCAACATGGTAGTTCTTCGGATCAAGCAAGGCTTAGAGCACAATCAAGCTTTGGAAGCAATGTTGGGACCAATAATATCCAGCAAAATACGTTGGGAAGCTATGCAAACCAACCATATTATGCACAAAGCTCTTACAACAATGTTGGTGTTGTCTTTCCTTCAGATGGAGTAACGAGACATGGCTTGATGACTTCCACAAATGGCCTAAGAGGAGGTGTGAACTATGGTGGCAACCAATTGATGTATCCAAACTATGCTTCATTGGGAAATCAACACAAGTTTAGCTGTGGTCAAGGAAACTGGAACATTGGATCTTTGAATTACAACAGGAGCTTTGGCTTGATCAATGAGACGAGTGAAAATGTGAATAAGAATGTGTTAAGTTTTGGGCAAGGAAATTTTGATTTGGCTCAAGGAGGGTTTGCTTCTACTTCTAGTGCTGGGGAGTGTTGGTCAAAGGAGCTTCCAGCAGAAAATATTCAAGGAAACCCAACACTGCATCAACAACTACAAGGCAATTTTGCAGAAAATGATATTGGTACTTCCATTGGTGAGGGCAATGTCAACCTCCTGGACGAAGATGACTTTTCTAATCTTTTCATGATGCTAGATGAAATGGATCTTCTTAATGAGACTGAAGAGAACCATAATGCAAATGACTTCTTGAAGTCTGACTTTTCAAGCTCTAATCACGCTGTGCAGTCCCTTGAACAGTCTTACAAAGCTCTGACAAATTACCAAGCTACTACTGATGTGATTATTAACCCAACTAAAGGCACATCAAATCTGCCAAACGAGACCTCAACAAGCTCTGACAAGAATTCTAACCGATTAATGGGAGGTGATGATGGATATGCAAACATGGAACACTTGAACAGCTTATATATCCTCAACAAAAGTTTCGGTTGCCAATTAACAGAGGGTTTTATCGACAAACTCAACGAGCTTTGCCCCACGACAGTTGGGTCCCTTTTCTTTCGTCTTAGTCATACTTGA
>Glyma16g32311.1 sequence type=predicted peptide gene model=Glyma16g32311 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTHERVDIISVLVVDDDKTSLAIVSNILTSLGYKVLTANSALNALEILREFRGFIDLLITELHISGMNGFEFQKYVENQFHLPVIIMSSDGRNSVISKSLANGAAHYILKPFSADDFKDIWQYARKLTFQNIEGGSIPGDNTSIQDVHSAISSNVSKRKRKCFPRKSTQMNKEGQSGESSTLVKKPKVVWTPYLHNRFLLAIKQIGLEKAVPKTILQVMNVPNLTRENVASHLQKYRIFLRKVADKGLLEGLSNRDLRSRFAYGLSASMIKDIQAKTAKSRVTAQQYMKRIAHQSVYGGIANAVKSYNHVSSVTNTPLGRSHQFPHPYHKGLNMMLHNQHGSSSDQARLRAQSSFGSNVGTNNIQQNTLGSYANQPYYAQSSYNNVGVVFPSDGVTRHGLMTSTNGLRGGVNYGGNQLMYPNYASLGNQHKFSCGQGNWNIGSLNYNRSFGLINETSENVNKNVLSFGQGNFDLAQGGFASTSSAGECWSKELPAENIQGNPTLHQQLQGNFAENDIGTSIGEGNVNLLDEDDFSNLFMMLDEMDLLNETEENHNANDFLKSDFSSSNHAVQSLEQSYKALTNYQATTDVIINPTKGTSNLPNETSTSSDKNSNRLMGGDDGYANMEHLNSLYILNKSFGCQLTEGFIDKLNELCPTTVGSLFFRLSHT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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