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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07220 | AT | Annotation by Michelle Graham. TAIR10: BCL-2-associated athanogene 3 | chr5:2265545-2266720 REVERSE LENGTH=303 | SoyBase | E_val: 2.00E-113 | ISS |
| GO:0006301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: postreplication repair | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0051087 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chaperone binding | SoyBase | N/A | ISS |
| KOG4361 | KOG | BCL2-associated athanogene-like proteins and related BAG family chaperone regulators | JGI | ISS | |
| PTHR12329 | Panther | BCL2-ASSOCIATED ATHANOGENE | JGI | ISS | |
| PTHR12329:SF8 | Panther | OS09G0524800 PROTEIN | JGI | ISS | |
| PF00240 | PFAM | Ubiquitin family | JGI | ISS | |
| PF02179 | PFAM | BAG domain | JGI | ISS | |
| UniRef100_G7IAQ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BAG-domain protein 1 / regulator of cell death n=1 Tax=Medicago truncatula RepID=G7IAQ7_MEDTR | SoyBase | E_val: 2.00E-145 | ISS |
| UniRef100_I1MQ22 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MQ22_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g32290 not represented in the dataset |
Glyma16g32290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g27100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g198600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g32290.2 sequence type=transcript gene model=Glyma16g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACAGGGTGTCAGCATAGTTAGCTGGCCACTCGTTTTTATATTATTATTATTTTTCTGTGTTTCCATTTCACCACTTTCTCCCTCCGATTTCTCCAGAACAGCAAGGGAGAATCAATTCCTCATCGCTGCAATTCTTCTTTCACTCTCTAGTTTCTCTTCTTTCTTTCTTCCAACCTCTTCTCTTCTATACCCTTCAGAAAAGAAATTAAAAAACGTAGCTTCAGATTATTCTAGCTCTTCATTTTTCCATGTTCAATATTATGCTGTAAATTTCTCAAACTCACTGTTTCAGCCACATTTTGGTCTAAAGATCCGTGCTTTGACCCTTGGCAGGTTCAGCTTTTGAAGGGGTTGGAGTTTTTCTTCCTCATAAGCCATTGATTAGTCCATGTTTTTCTTTTTCTCTCTCTAAAGTTCAAAGTTTTTGTTGTTTTCCCCCCGTGTCTTTCTCTCTCTTGTGGTGGACTTGAGGAATGCTGGGGTCAGAGGTTTCTGAGACATGTTCTAGCAGACTTTTGGTGAATTGGGTCACTGTGGTTTCTGTCATGGGTGGTAGAGAATCTGAGTCCTCAGAGATCTAAGCCTCTCTGTCTGGTGTTTTGTTCATCACAGACCCTTTTGCTGTGGCATAGTTGTGAAAGTGAAAAAGTGAGAGAAGATGATGAAGATGAAGAATATTAGTAGTAGCAACAATAATAATAGGACAAATGGTCTTTCTTCCATCATGAATGGAGGAGGCTCAGGTGGTTGTAGATCTGAGCCTGGTTCCAAGGAATGGGAGATGAGGCCAGGTGGAATGCTGGTTCAGATGAGAACTGCTGACTCTGATCGGAACCCAGCACTTGTGCCCACAATTAGAGTTAGGGTCAAGTATGGTTCAATTTACCATGAAGTCAACATTAGTTCACAAGCTACATTTGGGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATCAAAAGCTGTTATACAAAGACAAGGAGAGGGATTCAAAGGCTTTTCTTGACATGGTTGGGGTGAAGGACAAATCCAAGATAGTGCTAATGGAAGACCCTATTAGTCAAGAGAAGAGGTTGTTAGAGAGAAGAAAGAATGCTAAGATGGAGAAAGCTGCAAAGTCGATCTCAGAAATCAGCTTGGAAATAGATAGACTTGCAGGGAGGTTGCTCAAATTGGATGGTATAATGGCTGATGGGGATGTGAAACTACAAAGGAAGATGCAGGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTTGATGTGCTGAAAGTTAAGAATTCTATGCCTAGTAGCAATGGAGACCATGCCCCAGTGCAGCCTCAACAGAAGCATTCAAATGGGCAACAACAAAAGTATTCAAATGGACATCATAGATTAGCCTTAGTACCAATTCAGGAGCAGCAACAAGAACAACCAAGGAACTCAAATGAGAATTCTCTGGAACTATACCAAGAGCAACAACACCAACCCTCAAGGAATTCCACCTCAGGAGTTGTAGTTACCACAAATTGGGAGTTGTTTGATTCTGTCCCACCATTAATCCCTGTGCAATCCACATCCCCACCCTCCTCAGTGACCAATAATTCAGGTCCTCCCAAGTTCAATTGGGAATTCTTCGACTAAGTACCATATCACGTGCTTTTACTTGTGTGGATGTGATTTGGGTTTGTCTTCCACTTGGAGTGTTATATGTTTTACATTCTTTTCTGTATTTAGATTTGTTTAGCAACCCCCTTATAATCTGTCATTTACTTGAAAAATAAATGGGATTGCTATGATAGTGATTATCATAAAAAAAAGAAGATAAATTTCTGTGATTTTGTTGTCCACCGAATTCATTTACCAAATGTATGGGCCTATTTTTGATGGATATATGTAATATTATTATAAGCATTTGCCACTTTGTTATTGGAAACATTAGGATTTAACCACATCTGA
>Glyma16g32290.1 sequence type=CDS gene model=Glyma16g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAAGATGAAGAATATTAGTAGTAGCAACAATAATAATAGGACAAATGGTCTTTCTTCCATCATGAATGGAGGAGGCTCAGGTGGTTGTAGATCTGAGCCTGGTTCCAAGGAATGGGAGATGAGGCCAGGTGGAATGCTGGTTCAGATGAGAACTGCTGACTCTGATCGGAACCCAGCACTTGTGCCCACAATTAGAGTTAGGGTCAAGTATGGTTCAATTTACCATGAAGTCAACATTAGTTCACAAGCTACATTTGGGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATCAAAAGCTGTTATACAAAGACAAGGAGAGGGATTCAAAGGCTTTTCTTGACATGGTTGGGGTGAAGGACAAATCCAAGATAGTGCTAATGGAAGACCCTATTAGTCAAGAGAAGAGGTTGTTAGAGAGAAGAAAGAATGCTAAGATGGAGAAAGCTGCAAAGTCGATCTCAGAAATCAGCTTGGAAATAGATAGACTTGCAGGGAGGGTATCAGCCTTTGAGTCAATTATTAGCAAAGGTGGGAAAGTTGTGGAAACAGATGTGCATAATCTGATTGAGTTATTGATGAATCAGTTGCTCAAATTGGATGGTATAATGGCTGATGGGGATGTGAAACTACAAAGGAAGATGCAGGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTTGATGTGCTGAAAGTTAAGAATTCTATGCCTAGTAGCAATGGAGACCATGCCCCAGTGCAGCCTCAACAGAAGCATTCAAATGGGCAACAACAAAAGTATTCAAATGGACATCATAGATTAGCCTTAGTACCAATTCAGGAGCAGCAACAAGAACAACCAAGGAACTCAAATGAGAATTCTCTGGAACTATACCAAGAGCAACAACACCAACCCTCAAGGAATTCCACCTCAGGAGTTGTAGTTACCACAAATTGGGAGTTGTTTGATTCTGTCCCACCATTAATCCCTGTGCAATCCACATCCCCACCCTCCTCAGTGACCAATAATTCAGGTCCTCCCAAGTTCAATTGGGAATTCTTCGACTAA >Glyma16g32290.2 sequence type=CDS gene model=Glyma16g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAAGATGAAGAATATTAGTAGTAGCAACAATAATAATAGGACAAATGGTCTTTCTTCCATCATGAATGGAGGAGGCTCAGGTGGTTGTAGATCTGAGCCTGGTTCCAAGGAATGGGAGATGAGGCCAGGTGGAATGCTGGTTCAGATGAGAACTGCTGACTCTGATCGGAACCCAGCACTTGTGCCCACAATTAGAGTTAGGGTCAAGTATGGTTCAATTTACCATGAAGTCAACATTAGTTCACAAGCTACATTTGGGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATCAAAAGCTGTTATACAAAGACAAGGAGAGGGATTCAAAGGCTTTTCTTGACATGGTTGGGGTGAAGGACAAATCCAAGATAGTGCTAATGGAAGACCCTATTAGTCAAGAGAAGAGGTTGTTAGAGAGAAGAAAGAATGCTAAGATGGAGAAAGCTGCAAAGTCGATCTCAGAAATCAGCTTGGAAATAGATAGACTTGCAGGGAGGTTGCTCAAATTGGATGGTATAATGGCTGATGGGGATGTGAAACTACAAAGGAAGATGCAGGTAAAAAGAGTTCAAAAGTATGTTGAAACTCTTGATGTGCTGAAAGTTAAGAATTCTATGCCTAGTAGCAATGGAGACCATGCCCCAGTGCAGCCTCAACAGAAGCATTCAAATGGGCAACAACAAAAGTATTCAAATGGACATCATAGATTAGCCTTAGTACCAATTCAGGAGCAGCAACAAGAACAACCAAGGAACTCAAATGAGAATTCTCTGGAACTATACCAAGAGCAACAACACCAACCCTCAAGGAATTCCACCTCAGGAGTTGTAGTTACCACAAATTGGGAGTTGTTTGATTCTGTCCCACCATTAATCCCTGTGCAATCCACATCCCCACCCTCCTCAGTGACCAATAATTCAGGTCCTCCCAAGTTCAATTGGGAATTCTTCGACTAA
>Glyma16g32290.1 sequence type=predicted peptide gene model=Glyma16g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMKMKNISSSNNNNRTNGLSSIMNGGGSGGCRSEPGSKEWEMRPGGMLVQMRTADSDRNPALVPTIRVRVKYGSIYHEVNISSQATFGELKKMLSGPTGLHHEDQKLLYKDKERDSKAFLDMVGVKDKSKIVLMEDPISQEKRLLERRKNAKMEKAAKSISEISLEIDRLAGRVSAFESIISKGGKVVETDVHNLIELLMNQLLKLDGIMADGDVKLQRKMQVKRVQKYVETLDVLKVKNSMPSSNGDHAPVQPQQKHSNGQQQKYSNGHHRLALVPIQEQQQEQPRNSNENSLELYQEQQHQPSRNSTSGVVVTTNWELFDSVPPLIPVQSTSPPSSVTNNSGPPKFNWEFFD* >Glyma16g32290.2 sequence type=predicted peptide gene model=Glyma16g32290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMKMKNISSSNNNNRTNGLSSIMNGGGSGGCRSEPGSKEWEMRPGGMLVQMRTADSDRNPALVPTIRVRVKYGSIYHEVNISSQATFGELKKMLSGPTGLHHEDQKLLYKDKERDSKAFLDMVGVKDKSKIVLMEDPISQEKRLLERRKNAKMEKAAKSISEISLEIDRLAGRLLKLDGIMADGDVKLQRKMQVKRVQKYVETLDVLKVKNSMPSSNGDHAPVQPQQKHSNGQQQKYSNGHHRLALVPIQEQQQEQPRNSNENSLELYQEQQHQPSRNSTSGVVVTTNWELFDSVPPLIPVQSTSPPSSVTNNSGPPKFNWEFFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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