Glyma16g32080 - SoyBase

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Report for Sequence Feature Glyma16g32080

Feature Type:	gene_model
Chromosome:	Gm16
Start:	35274147
stop:	35275762
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g32080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03840	AT	Annotation by Michelle Graham. TAIR10: PEBP (phosphatidylethanolamine-binding protein) family protein \| chr5:1024760-1025796 REVERSE LENGTH=177	SoyBase	E_val: 1.00E-84	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009910	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0090344	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cell aging	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031982	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vesicle	SoyBase	N/A	ISS
GO:0003712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription cofactor activity	SoyBase	N/A	ISS
GO:0008429	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylethanolamine binding	SoyBase	N/A	ISS
KOG3346	KOG	Phosphatidylethanolamine binding protein	JGI		ISS
PTHR11362	Panther	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	JGI		ISS
PF01161	PFAM	Phosphatidylethanolamine-binding protein	JGI		ISS
UniRef100_B3SN57	UniRef	Annotation by Michelle Graham. Best UniRef hit: Brother of FT and TFL1 protein n=1 Tax=Glycine max RepID=B3SN57_SOYBN	SoyBase	E_val: 1.00E-123	ISS
UniRef100_B3SN57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Brother of FT and TFL1 protein n=1 Tax=Glycine max RepID=B3SN57_SOYBN	SoyBase	E_val: 1.00E-123	ISS

Expression Patterns of Glyma16g32080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g32080

Paralog	Evidence	Comments
Glyma09g26550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g32080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g196300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g32080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g32080

Limit To All Plant Sequences

>Glyma16g32080.4   sequence type=transcript   gene model=Glyma16g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATCACTCTCTCCAAATCCTTTTGGCGCCTATAAAATGCCTTCAAAATCTCTCACTTCACATATATCCTCATACACAAAGTTTTAATTACAGCATATTTTTTTCATTTTCTTCGATCCCTTCACTTTGCAATTTCATGTCTAGGCTCATGGAACCACTTGTTGTGGGAAGAGTGATAGGAGAAGTGGTCGACATTTTCAGCCCAAGTGTAAAAATGAATGTGACATATTCCACCAAGCAAGTTGCCAATGGTCATGAGTTAATGCCTTCTACTATTATGGCCAAGCCACGCGTTGAGATTGGTGGTGATGACATGAGGACTGCTTATACCTTGATCATGACTGACCCAGATGCTCCAAGTCCTAGTGACCCATGTCTAAGGGAACATCTCCACTGGATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGGAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACAGGTATGTGTTCATCTTGTTCAAGCAGAGAGGAAGACAAACAGTGAGGCCTCCATCTTCAAGAGACCACTTCAACACAAGGAGGTTCTCAGAAGAGAATGGCCTTGGCCTACCAGTTGCTGCAGTTTACTTCAATGCTCAAAGAGAGACTGCTGCAAGAAGGAGGTGATTCCTGAAGAAGATGAAGAAGAAAAGGGTTTGGCATGGTTGAACAATAAGGATAAGTGTGTTTGATTAAATCTCTTCCTCTCTTGAGTTTTTCCTTTGGAGGCCACAAGGGAAATTGTGAGGTAGATGGTGTTCAAAAGGTAGTAGATATTCTTGATGTACTTTGTACTTCTAGCTATTATAGGTTATGGGAAGTTGGGGACCAAACTAGTGTTATGATCCTTTAAGGATCTATATATGATTTGTGATAGGAATTAAGAACATAGCTTTACCAGAGCTGTGTGGCTTTCTAGTAGAGTGTAATGATATGTGTGATGATATAATTAATGAGAAAGAGGACATGTGTTATATGCAAAGCTGTTACTTTCTAACACTTTCAGTGGTCGAGCTCTGTCATTTC

Coding sequences of Glyma16g32080

Limit To All Plant Sequences

>Glyma16g32080.3   sequence type=CDS   gene model=Glyma16g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAGGCTCATGGAACCACTTGTTGTGGGAAGAGTGATAGGAGAAGTGGTCGACATTTTCAGCCCAAGTGTAAAAATGAATGTGACATATTCCACCAAGCAAGTTGCCAATGGTCATGAGTTAATGCCTTCTACTATTATGGCCAAGCCACGCGTTGAGATTGGTGGTGATGACATGAGGACTGCTTATACCTTGATCATGACTGACCCAGATGCTCCAAGTCCTAGTGACCCATGTCTAAGGGAACATCTCCACTGGATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGGAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACAGGTATGTGTTCATCTTGTTCAAGCAGAGAGGAAGACAAACAGTGAGGCCTCCATCTTCAAGAGACCACTTCAACACAAGGAGGTTCTCAGAAGAGAATGGCCTTGGCCTACCAGTTGCTGCAGTTTACTTCAATGCTCAAAGAGAGACTGCTGCAAGAAGGAGGTGA

>Glyma16g32080.4   sequence type=CDS   gene model=Glyma16g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAGGCTCATGGAACCACTTGTTGTGGGAAGAGTGATAGGAGAAGTGGTCGACATTTTCAGCCCAAGTGTAAAAATGAATGTGACATATTCCACCAAGCAAGTTGCCAATGGTCATGAGTTAATGCCTTCTACTATTATGGCCAAGCCACGCGTTGAGATTGGTGGTGATGACATGAGGACTGCTTATACCTTGATCATGACTGACCCAGATGCTCCAAGTCCTAGTGACCCATGTCTAAGGGAACATCTCCACTGGATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGGAAAAGAGATTGTAGGCTATGAGAGTCCAAAGCCAGTAATAGGAATCCACAGGTATGTGTTCATCTTGTTCAAGCAGAGAGGAAGACAAACAGTGAGGCCTCCATCTTCAAGAGACCACTTCAACACAAGGAGGTTCTCAGAAGAGAATGGCCTTGGCCTACCAGTTGCTGCAGTTTACTTCAATGCTCAAAGAGAGACTGCTGCAAGAAGGAGGTGA

Predicted protein sequences of Glyma16g32080

Limit To All Plant Sequences

>Glyma16g32080.3   sequence type=predicted peptide   gene model=Glyma16g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRLMEPLVVGRVIGEVVDIFSPSVKMNVTYSTKQVANGHELMPSTIMAKPRVEIGGDDMRTAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDVSFGKEIVGYESPKPVIGIHRYVFILFKQRGRQTVRPPSSRDHFNTRRFSEENGLGLPVAAVYFNAQRETAARRR*

>Glyma16g32080.4   sequence type=predicted peptide   gene model=Glyma16g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRLMEPLVVGRVIGEVVDIFSPSVKMNVTYSTKQVANGHELMPSTIMAKPRVEIGGDDMRTAYTLIMTDPDAPSPSDPCLREHLHWMVTDIPGTTDVSFGKEIVGYESPKPVIGIHRYVFILFKQRGRQTVRPPSSRDHFNTRRFSEENGLGLPVAAVYFNAQRETAARRR*

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