Glyma16g31800 - SoyBase

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Report for Sequence Feature Glyma16g31800

Feature Type:	gene_model
Chromosome:	Gm16
Start:	35078773
stop:	35082273
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g31800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34930	AT	Annotation by Michelle Graham. TAIR10: disease resistance family protein / LRR family protein \| chr2:14737169-14739886 REVERSE LENGTH=905	SoyBase	E_val: 2.00E-120	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF473	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_UPI000233EC03	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EC03 related cluster n=1 Tax=unknown RepID=UPI000233EC03	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g31800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g31800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g193600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g31800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g31800

Limit To All Plant Sequences

>Glyma16g31800.2   sequence type=CDS   gene model=Glyma16g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATTCCTTCTTTCCTTTGTGCAATGACCTCCTTGACTCACCTCGACCTCTCTTATTCTCGATTCATGGGGAAGATTCCATCTCAGATTGGGAATCTCTCCAATTTGCTCTATCTTGGCCTTGGAGGTAATTATCATGCTGAAAATGTAGAATGGGTATCAAGTATGTGGAAGCTTGAATATCTTGATTTGAGTAGTGCAAACCTATCCAAAGCATTTCATTGGCTACACACTCTCCAATCTCTTCCTTCTTTGACCCACCTATATTTGTCAGGATGCAAACTCCCTCACTATAATGAACCATCCTTGCTCAACTTCTCATCTTTGCAAACTCTTGATCTTTCCGATACTAGTTATTCCCCTGCCATTTCTTTTGTCCCCAAGTGGATATTCAAATTGAAGAAACTTGTTTCTCTTCAATTATCAGATAATTATGAAATCCAAGGTCCGATTCCTTGTGGTATTCGAAACCTCACACATCTTCAAAATCTTGACTTGTCTTTCAATTCATTTTCATCTTCTATACCTAATTGCTTATACGGTCTTCATCGTCTCAAGTTCCTCAACCTAAGGTACAACAACTTGCATGGGACTATTTCTGATGCCCTGGGAAATTTGACTTCTCTTGTTGAACTTGATTTATCAGTTAATCAACTTGAAGGAACCATTCCAACTTCTTTTGGAAATTTGACTTCTCTTGTTGAACTTGATTTATCACTTAATCAACTTGAAGGAACCATTCCAATTTCTTTGGGAAATTTGACTTCTCTTGTTGAACTTGATTTATCAGCTAATCAACTTGAAGGAAACATTCCAACTTCTTTGGGTAATCTCTGCAACTTAAGGGTGATAGATTTATCATATCTCAAACTCAACCAACAGGTTAATGAACTTTTAGAAATTCTTGCTCCTTGTATTTCCCATGGACTCACAAGACTTGCAGTTCAGAGTTCACGACTTTCAGGCAATCTGACAGATCATATTGGGGCATTTAAAAATATTGAGCAGCTACGGTTTTACAACAACTCAATTGGTGGTGCTCTTCCTAGATCATTTGGAAAACTTTCATCATTAAGATATCTCGATCTCTCTATCAATAAATTCAGTGGAAATCCATTTGAAAGTCTTCGATCACTCTCTAAATTGTTATCTCTTCATATTGACGGCAATCTTTTTCACGGAGTTGTCAAGGAAGATGATCTTGCAAATCTTACAAGCTTGACGGGGTTTGTCGCATCGGGGAACAATTTCACTTTAAAAGTGGGTCCCAATTGGATTCCTAATTTTCAACTTACCTATTTGGAAGTGACATCATGGCAATTAGGTCCCAGCTTTCCATTGTGGATTCAGTCACAAAACAAACTTAAATATGTTGGACTATCTAACACGGGGATTTTCGATTCTATTCCCACACAGATGTGGGAAGCACTTTCTCAGGTTTTGTATTTAAACCTCTCTCGTAATCACATCCATGGTGAGATTGGGACTACATTAAAGAATCCAATATCTATCCGAACTATTGATCTAAGCTCAAATCACTTGTGTGGTAAATTACCCTATCTTTCAAGTGATGTGCATCAGTTAGATCTTTCAAGCAATTCATTCTCTGAATCCATGAATGACTTTTTATGTAACGATCAGGACAAGCCAATACTATTAGAATTTCTGAATCTTGCATCAAATAATTTGTCAGGAGAGATACCTGATTGCTGGATGAATTGGACATTTCTTGCGGATGTAAATTTACAAAGCAACCATTTTGTTGGGAACTTACCCCAATCCATGGGTTCCTTGGCAGACCTGCAGTCTTTACAAATTCGTAACAACACACTCTCAGGAATATTTCCAACCAGTTTGAAGAAGAATAACCAATTGATATCCTTGGACCTTGGGGAAAATAATCTTTCAGGAACTATTCCAACATGGGTTGGAGAAAACCTCTTAAATGTGAAAATCCTCCGCCTTCGATCAAACAGATTTGGCGGCCACATTCCAAATGAAATATGTCAGATGAGTCTTCTTCAGGTTTTAGACCTTGCACAAAACAATCTGTCTGGCAATATACCGAGCTGTTTCAGTAACTTGAGTGCCATGACACTAAAGAACCAAAGTACAGATCCTCGTATCTATTCTCAAGGAAAATATATTGTGTCTTACTCTGCCACGGAAAGTATAGTTAGTGTGCTACTATGGCTGAAAGGAAGAGGAGATGAGTACAGAAACATTCTGGGTTTGGTAACAAGCATTGATCTGTCAAGTAACAAGTTATTTGGGGAAATACCAAGAGAAATCACATATCTAAATGGATTGAATTTTTTAAACATGTCCCACAACCAATTGATTGGTCATATTCCACAAGGTATAGGTAATATGAGATCATTACAGTCCATTGATTTTTCGAGGAATCAACTTTTTGGTGAAATCCCTCCAAGCATTGCAAATTTGAGCTTTCTGAGCATGCTAGACTTGTCTTACAATCATTTGAAGGGAAATATTCCAACAGGAACTCAATTGCAAACCTTTGATGCCTCCAGCTTTATCGGCAACAATCTATGTGGTCCACCACTGCCCATAAACTGCAGCTCCAATGGGAAAACCCATAGTTATGAAGGAAGTGATGGGCATGGAGTGAATTGGTTTTTTGTCAGTATGACAGTTGGATTTATTGTGGGATTCTGGATAGTGATTGCTCCTTTGCTGATTTGTAGATCATGGCGGTATGCCTATTTTCATTTCCTTGATCATGTGTGGTTCAAACTTCAATCTTTTTTCTCATGTAGTATCACTGTTTAG

Predicted protein sequences of Glyma16g31800

Limit To All Plant Sequences

>Glyma16g31800.2   sequence type=predicted peptide   gene model=Glyma16g31800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIPSFLCAMTSLTHLDLSYSRFMGKIPSQIGNLSNLLYLGLGGNYHAENVEWVSSMWKLEYLDLSSANLSKAFHWLHTLQSLPSLTHLYLSGCKLPHYNEPSLLNFSSLQTLDLSDTSYSPAISFVPKWIFKLKKLVSLQLSDNYEIQGPIPCGIRNLTHLQNLDLSFNSFSSSIPNCLYGLHRLKFLNLRYNNLHGTISDALGNLTSLVELDLSVNQLEGTIPTSFGNLTSLVELDLSLNQLEGTIPISLGNLTSLVELDLSANQLEGNIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCISHGLTRLAVQSSRLSGNLTDHIGAFKNIEQLRFYNNSIGGALPRSFGKLSSLRYLDLSINKFSGNPFESLRSLSKLLSLHIDGNLFHGVVKEDDLANLTSLTGFVASGNNFTLKVGPNWIPNFQLTYLEVTSWQLGPSFPLWIQSQNKLKYVGLSNTGIFDSIPTQMWEALSQVLYLNLSRNHIHGEIGTTLKNPISIRTIDLSSNHLCGKLPYLSSDVHQLDLSSNSFSESMNDFLCNDQDKPILLEFLNLASNNLSGEIPDCWMNWTFLADVNLQSNHFVGNLPQSMGSLADLQSLQIRNNTLSGIFPTSLKKNNQLISLDLGENNLSGTIPTWVGENLLNVKILRLRSNRFGGHIPNEICQMSLLQVLDLAQNNLSGNIPSCFSNLSAMTLKNQSTDPRIYSQGKYIVSYSATESIVSVLLWLKGRGDEYRNILGLVTSIDLSSNKLFGEIPREITYLNGLNFLNMSHNQLIGHIPQGIGNMRSLQSIDFSRNQLFGEIPPSIANLSFLSMLDLSYNHLKGNIPTGTQLQTFDASSFIGNNLCGPPLPINCSSNGKTHSYEGSDGHGVNWFFVSMTVGFIVGFWIVIAPLLICRSWRYAYFHFLDHVWFKLQSFFSCSITV*

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