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Report for Sequence Feature Glyma16g31748

Feature Type:gene_model
Chromosome:Gm16
Start:35047856
stop:35049836
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g31748
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52300AT Annotation by Michelle Graham. TAIR10: CAP160 protein | chr5:21237205-21239404 FORWARD LENGTH=618 SoyBaseE_val: 2.00E-19ISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF07918PFAM CAP160 repeat JGI ISS
UniRef100_Q9SWB3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein PM39 (Fragment) n=1 Tax=Glycine max RepID=Q9SWB3_SOYBN SoyBaseE_val: 4.00E-165ISS
UniRef100_UPI000233EA89UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EA89 related cluster n=1 Tax=unknown RepID=UPI000233EA89 SoyBaseE_val: 4.00E-177ISS

Expression Patterns of Glyma16g31748
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g31748 not represented in the dataset
Glyma16g31748 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g31748 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g193200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g31748
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g31748
>Glyma16g31748.1   sequence type=CDS   gene model=Glyma16g31748   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCACAGCAATAGCTGACAAAGCCATCACTGCCAAAAATGTTGTAGCTTCAAAGCTCGGATACAGTGATGACACCACCGAAACAACTCAAACAAAGCATCAAGAAGAGAACACAAGCAATGAAAACCCTGATAAAGCCGTGTCAGCAAAAAACACCGTAGCTTCCAAGCTCGGATATGGCAACAACACTGAAACAAAAACAACTCAAACCACTCAATCAGCAACCTCTGCAATAGCTGATAAAGCTTTCTCAGCCAAAAACACCGTAGCTTCGAAGCTTGCACCAACAACACCACAAGAGAAGAGAACTGACCATGCTGCTGCTCCTACAGAATATGGAAAAAGTGTTGCTCAGTCTCTGACAGAGAAACTAGCTCCAGTTTCTGGAAAAGTTGCTGGTGTAGGAAGTGGTGTGAAGTCCAAAGTTTCTGGAACTCAAACTAGTAGTGTGGGTGTGGAACAGGACAAGGGGGTTTCTGTGAAGGACTATTTGGTGGACAAACTGAGGCCTGGTGATGAAGACAGGGCTCTCTCTGAAGTGATATCAGAGACTCTGCACAAGAAGGAACTGCCCCCAGTGGAAGTTACTGAAGAAGGTGTGAGAAAGGTGGTTTCTGATGCTGTGCATAAGAGAGAGGATGATCCTGAGAGAAGAATGGAACATCAAAGAATACTGGGAAAGGTAACTGAGTCAGAGGAAGTGAAGGGAAGGTTAGGAGGTGAAAGTGTGGTGACAGAGAAAAAGTACCAAGAGATGTATGTGAATAGTCCGGGGAAAGGTGTGGTTGATAAGCTTAAAGGTATGGTTGGGACATGGTTTACCAACCCAGCAGAGAATCAATCTTCACAAGATTCATCTATGAATTATGAGGCAGGAAGGGCAGAAGTGGAACAAGTTAACCAAGGTGCAGCAGGTGAAAGAAGGCAGCAGGAGTCATATAATTGA
Predicted protein sequences of Glyma16g31748
>Glyma16g31748.1   sequence type=predicted peptide   gene model=Glyma16g31748   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAIADKAITAKNVVASKLGYSDDTTETTQTKHQEENTSNENPDKAVSAKNTVASKLGYGNNTETKTTQTTQSATSAIADKAFSAKNTVASKLAPTTPQEKRTDHAAAPTEYGKSVAQSLTEKLAPVSGKVAGVGSGVKSKVSGTQTSSVGVEQDKGVSVKDYLVDKLRPGDEDRALSEVISETLHKKELPPVEVTEEGVRKVVSDAVHKREDDPERRMEHQRILGKVTESEEVKGRLGGESVVTEKKYQEMYVNSPGKGVVDKLKGMVGTWFTNPAENQSSQDSSMNYEAGRAEVEQVNQGAAGERRQQESYN*






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