Glyma16g31270 - SoyBase

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Report for Sequence Feature Glyma16g31270

Feature Type:	gene_model
Chromosome:	Gm16
Start:	34682085
stop:	34683529
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g31270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23760	AT	Annotation by Michelle Graham. TAIR10: Copper transport protein family \| chr5:8013242-8014129 REVERSE LENGTH=103	SoyBase	E_val: 7.00E-27	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF27	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_B9R9B5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9R9B5_RICCO	SoyBase	E_val: 6.00E-34	ISS
UniRef100_I1MPU0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MPU0_SOYBN	SoyBase	E_val: 3.00E-61	ISS

Expression Patterns of Glyma16g31270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g31270 not represented in the dataset	Glyma16g31270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g31270

Paralog	Evidence	Comments
Glyma09g25520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g31270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma16g31270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g31270

Limit To All Plant Sequences

>Glyma16g31270.2   sequence type=transcript   gene model=Glyma16g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATATAAAAAATTATGTGATCAATAATTTTATTTACCATTTTTTCCCTTTCTCTTTGTGCATGTTATCCCTCACTGGATCCACAACAGAAGGTTGTGTTAAAGGTTATGACTATGACTGATGACAAAACAAAGCAAAAGGCTATAGAAGCAGCTGCAGATATCTATGGGGTTGATTCAATTGTTGCTGATGTGAAGGAGCAGAAGTTGACTGTGATTGGTCAAATGGACACAGTGAAAATAGTGAAGAAGCTGAAGAAAGTAGGAAAAGTGGATATAGTATCAGTTGGACCTGCCAAGGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAAAAGGAAGAAAAAAAAGAAGAGAAAAAGGAGGAGAAGAAAGAGGAGAAGAAGGAAGAAAAGAAGGAAGAGAAGAAGGAGGAGAAAAAATAATAGACAATACTTGATTATCATCTGGTTTTGTCTAATTCTACCCTTTTATTTTCTTTTCTTTTTTTTTAATTTTGTTTTGCATATTTTCCCATATTCAGAAGCAATTGTTAGCTGCAAAAATTGTCTATAGAGTCTTTTATTTTTTGCTAATGTGGGTTTCTTCTCAAATCTGTTGCTCACAATCCTTTCTGAAGCATGGATCAATCTTCAATTGCTGAGAAGGAAATGAGTTATAATAAAAGAGTATCCTAAGAATTGGCCAGTGGACAAGATACAAAGACCATTAATTTTTAATTCTTCCCTTTCTCTCTGTTTTATATTTTCTAGTATAGAGAACCAGGGAAGGTATGGTAAATTGGTTGGCTTCAAAATTGTTATTTGTTATGATAATAAAATCGTAGTGCAAAACTGCAAATGATTTGATTATTTTATTTTTCTATGTTATG

>Glyma16g31270.3   sequence type=transcript   gene model=Glyma16g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTCGTTTTCCTAAAGTCGATCGGAAAAGATAAAAAGATGAGAAAGAAAGGAAAAGAGAAGAAAAAACCAAATGGCACAGAATGTCATCAGCATGCCTAAAACACTCAAAAATTTGTCCTGTGTGCTGTCGAATTGTACCATATATGCAGCAAGAAATTTGCATTCAGAGGGTCCATCTGTTGGATGTGACTTTCACAGTCACACGCACAAATAAAAAAGAAACTCTAAAACCTCACGCCTTTACTCTTATATAGTACATGCTCCTCAAAATTCTCAAACCCCTTCTTCTCTCACTCTTGCTTTCACACACACACTTCTACCTCTTCAAATGGCTCAGAAGGTTGTGTTAAAGGTTATGACTATGACTGATGACAAAACAAAGCAAAAGGCTATAGAAGCAGCTGCAGATATCTATGGTGGGGGTTGATTCAATTGTTGCTGATGTGAAGGAGCAGAAGTTGACTGTGATTGGTCAAATGGACACAGTGAAAATAGTGAAGAAGCTGAAGAAAGTAGGAAAAGTGGATATAGTATCAGTTGGACCTGCCAAGGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAAAAGGAAGAAAAAAAAGAAGAGAAAAAGGAGGAGAAGAAAGAGGAGAAGAAGGAAGAAAAGAAGGAAGAGAAGAAGGAGGAGAAAAAATAATAGACAATACTTGATTATCATCTGGTTTTGTCTAATTCTACCCTTTTATTTTCTTTTCTTTTTTTTTAATTTTGTTTTGCATATTTTCCCATATTCAGAAGCAATTGTTAGCTGCAAAAATTGTCTATAGAGTCTTTTATTTTTTGCTAATGTGGGTTTCTTCTCAAATCTGTTGCTCACAATCCTTTCTGAAGCATGGATCAATCTTCAATTGCTGAGAAGGAAATGAGTTATAATAAAAGAGTATCCTAAGAATTGGCCAGTGGACAAGATACAAAGACCATTAATTTTTAATTCTTCCCTTTCTCTCTGTTTTATATTTTCTAGTATAGAGAACCAGGGAAGGTATGGTAAATTGGTTGGCTTCAAAATTGTTATTTGTTATGATAATAAAATCGTAGTGCAAAACTGCAAATGATTTGATTATTTTATTTTTCTATGTTATG

Coding sequences of Glyma16g31270

Limit To All Plant Sequences

>Glyma16g31270.1   sequence type=CDS   gene model=Glyma16g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAGAAGGTTGTGTTAAAGGTTATGACTATGACTGATGACAAAACAAAGCAAAAGGCTATAGAAGCAGCTGCAGATATCTATGGGGTTGATTCAATTGTTGCTGATGTGAAGGAGCAGAAGTTGACTGTGATTGGTCAAATGGACACAGTGAAAATAGTGAAGAAGCTGAAGAAAGTAGGAAAAGTGGATATAGTATCAGTTGGACCTGCCAAGGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAAAAGGAAGAAAAAAAAGAAGAGAAAAAGGAGGAGAAGAAAGAGGAGAAGAAGGAAGAAAAGAAGGAAGAGAAGAAGGAGGAGAAAAAATAA

>Glyma16g31270.2   sequence type=CDS   gene model=Glyma16g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTATGACTGATGACAAAACAAAGCAAAAGGCTATAGAAGCAGCTGCAGATATCTATGGGGTTGATTCAATTGTTGCTGATGTGAAGGAGCAGAAGTTGACTGTGATTGGTCAAATGGACACAGTGAAAATAGTGAAGAAGCTGAAGAAAGTAGGAAAAGTGGATATAGTATCAGTTGGACCTGCCAAGGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAAAAGGAAGAAAAAAAAGAAGAGAAAAAGGAGGAGAAGAAAGAGGAGAAGAAGGAAGAAAAGAAGGAAGAGAAGAAGGAGGAGAAAAAATAA

>Glyma16g31270.3   sequence type=CDS   gene model=Glyma16g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGGGTTGATTCAATTGTTGCTGATGTGAAGGAGCAGAAGTTGACTGTGATTGGTCAAATGGACACAGTGAAAATAGTGAAGAAGCTGAAGAAAGTAGGAAAAGTGGATATAGTATCAGTTGGACCTGCCAAGGAAGAGAAGAAGGAAGAAAAGAAAGAGGAGAAAAAGGAAGAAAAAAAAGAAGAGAAAAAGGAGGAGAAGAAAGAGGAGAAGAAGGAAGAAAAGAAGGAAGAGAAGAAGGAGGAGAAAAAATAA

Predicted protein sequences of Glyma16g31270

Limit To All Plant Sequences

>Glyma16g31270.1   sequence type=predicted peptide   gene model=Glyma16g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQKVVLKVMTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGQMDTVKIVKKLKKVGKVDIVSVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK*

>Glyma16g31270.2   sequence type=predicted peptide   gene model=Glyma16g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTMTDDKTKQKAIEAAADIYGVDSIVADVKEQKLTVIGQMDTVKIVKKLKKVGKVDIVSVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK*

>Glyma16g31270.3   sequence type=predicted peptide   gene model=Glyma16g31270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGVDSIVADVKEQKLTVIGQMDTVKIVKKLKKVGKVDIVSVGPAKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK*

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