SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25600 | AT | Annotation by Michelle Graham. TAIR10: Oxoglutarate/iron-dependent oxygenase | chr4:13060712-13062359 FORWARD LENGTH=291 | SoyBase | E_val: 7.00E-83 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0031418 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-ascorbic acid binding | SoyBase | N/A | ISS |
| PTHR10869 | Panther | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT | JGI | ISS | |
| UniRef100_B9RIW8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Prolyl 4-hydroxylase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9RIW8_RICCO | SoyBase | E_val: 1.00E-109 | ISS |
| UniRef100_I1MPL9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MPL9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g30130 not represented in the dataset |
Glyma16g30130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g25173 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g182000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g30130.2 sequence type=transcript gene model=Glyma16g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTAGCAAACTTACTAGAATGATGGAATAAGAAAAGCAAAGCAAACTGCTTAGAGAAGCAAAATCATGAGCCGCGTCAAATCACATCACTGCCAATTCGAAATTTCCAATTTCACAGAACTTTTGTTGCATTGATCTCCGATTTTGTTTTCCAACGCTTCTTCGTATTCTCACCAATCTCAAATGGCTTCTATCTCCCTTCTTCTCGCCCTGTTCGTGTTCTTCCTAATTGCCACTTCTCTTACCGAAAGCAGTAGGAAGGAATTAAGGAACAAGCAGGAAACTGCATTACAGATGTTAGAGCGCTCAATTCATTTTTCCAACAGAATTAATCCATCACGTGTTGTCCAAATCTCTTGGCAACCAAGGGTTTTTCTATACAAAGGGTTTTTGTCGGACAAGGAGTGTGACTACCTTGTTTCTTTGGCATATGCTGTGAAAGAAAAATCCTCAGGGAACGGTGGCCTTTCAGAGGGGGTTGAAACTTCCTTGGATATGGAAGATGATATTCTTGCAAGGATTGAAGAAAGACTTTCAGTTTGGGCTTTCCTTCCTAAAGAGTACAGCAAGCCTTTGCAGGTCATGCATTATGGGCCTGAGCAGAATGGTCGGAACTTAGATTATTTTACAAACAAAACCCAATTAGAATTAAGTGGACCTTTAATGGCAACAATTATTTTATATCTCTCAAATGATGTTACTCAAGGGGGTCAAATTCTTTTTCCTGAATCAGTGCCTGGGAGTAGCAGCTGGTCAAGTTGTAGTAATAGCAGCAATATTCTCCAACCAGTAAAAGGGAATGCAATTCTGTTTTTCTCTCTTCACCCAAGTGCTTCTCCTGACAAGAGTAGCTTCCATGCTAGATGCCCTGTCCTTGAGGGTGATATGTGGTCTGCAATTAAATACTTCTATGCAAAACCAATTAGTAGAGGTAAAGTCTCAGCCACATTAGATGGTGGTGAATGCACTGATGAAGATGACAGTTGTCCCGCTTGGGCAGCCGTGGGAGAATGTCAACGAAACCCTGTGTTCATGATTGGATCTCCTGATTATTATGGTACATGTAGGAAAAGTTGTAATGCATGCTGATCACAAGTTGATTTTACTTTTACACTTTTTGTTTATATAATTATTCTCCCTAGAGAAATACATGTGGAATTATCAATTGCTTTTTTTAAAAATTTCCTCAAGTTCTTTTGAGCTGCACATCAAAAGGTGCTGGAAATAGTGTATAGGAAATTAGAACTTGACACGATTTAGATTTCAATTTGATGTAATTTTTTTGAATATTCTTTTAGTGATGTATTGAGTGTTGACACATAATGATTTAAATTATTTAAATTACGTTGGGT >Glyma16g30130.3 sequence type=transcript gene model=Glyma16g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTAGCAAACTTACTAGAATGATGGAATAAGAAAAGCAAAGCAAACTGCTTAGAGAAGCAAAATCATGAGCCGCGTCAAATCACATCACTGCCAATTCGAAATTTCCAATTTCACAGAACTTTTGTTGCATTGATCTCCGATTTTGTTTTCCAACGCTTCTTCGTATTCTCACCAATCTCAAATGGCTTCTATCTCCCTTCTTCTCGCCCTGTTCGTGTTCTTCCTAATTGCCACTTCTCTTACCGAAAGTAGGAAGGAATTAAGGAACAAGCAGGAAACTGCATTACAGATGTTAGAGCGCTCAATTCATTTTTCCAACAGAATTAATCCATCACGTGTTGTCCAAATCTCTTGGCAACCAAGGGTTTTTCTATACAAAGGGTTTTTGTCGGACAAGGAGTGTGACTACCTTGTTTCTTTGGCATATGCTGTGAAAGAAAAATCCTCAGGGAACGGTGGCCTTTCAGAGGGGGTTGAAACTTCCTTGGATATGGAAGATGATATTCTTGCAAGGATTGAAGAAAGACTTTCAGTTTGGGCTTTCCTTCCTAAAGAGTACAGCAAGCCTTTGCAGGTCATGCATTATGGGCCTGAGCAGAATGGTCGGAACTTAGATTATTTTACAAACAAAACCCAATTAGAATTAAGTGGACCTTTAATGGCAACAATTATTTTATATCTCTCAAATGATGTTACTCAAGGGGGTCAAATTCTTTTTCCTGAATCAGTGCCTGGGAGTAGCAGCTGGTCAAGTTGTAGTAATAGCAGCAATATTCTCCAACCAGTAAAAGGGAATGCAATTCTGTTTTTCTCTCTTCACCCAAGTGCTTCTCCTGACAAGAGTAGCTTCCATGCTAGATGCCCTGTCCTTGAGGGTGATATGTGGTCTGCAATTAAATACTTCTATGCAAAACCAATTAGTAGAGGTAAAGTCTCAGCCACATTAGATGGTGGTGAATGCACTGATGAAGATGACAGTTGTCCCGCTTGGGCAGCCGTGGGAGAATGTCAACGAAACCCTGTGTTCATGATTGGATCTCCTGATTATTATGGTACATGTAGGAAAAGTTGTAATGCATGCTGATCACAAGTTGATTTTACTTTTACACTTTTTGTTTATATAATTATTCTCCCTAGAGAAATACATGTGGAATTATCAATTGCTTTTTTTAAAAATTTCCTCAAGTTCTTTTGAGCTGCACATCAAAAGGTGCTGGAAATAGTGTATAGGAAATTAGAACTTGACACGATTTAGATTTCAATTTGATGTAATTTTTTTGAATATTCTTTTAGTGATGTATTGAGTGTTGACACATAATGATTTAAATTATTTAAATTACGTTGGGT
>Glyma16g30130.1 sequence type=CDS gene model=Glyma16g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTATATTGTTGTTCTCATTGTTAATTTGCATTAGCAGTAGGAAGGAATTAAGGAACAAGCAGGAAACTGCATTACAGATGTTAGAGCGCTCAATTCATTTTTCCAACAGAATTAATCCATCACGTGTTGTCCAAATCTCTTGGCAACCAAGGGTTTTTCTATACAAAGGGTTTTTGTCGGACAAGGAGTGTGACTACCTTGTTTCTTTGGCATATGCTGTGAAAGAAAAATCCTCAGGGAACGGTGGCCTTTCAGAGGGGGTTGAAACTTCCTTGGATATGGAAGATGATATTCTTGCAAGGATTGAAGAAAGACTTTCAGTTTGGGCTTTCCTTCCTAAAGAGTACAGCAAGCCTTTGCAGGTCATGCATTATGGGCCTGAGCAGAATGGTCGGAACTTAGATTATTTTACAAACAAAACCCAATTAGAATTAAGTGGACCTTTAATGGCAACAATTATTTTATATCTCTCAAATGATGTTACTCAAGGGGGTCAAATTCTTTTTCCTGAATCAGTGCCTGGGAGTAGCAGCTGGTCAAGTTGTAGTAATAGCAGCAATATTCTCCAACCAGTAAAAGGGAATGCAATTCTGTTTTTCTCTCTTCACCCAAGTGCTTCTCCTGACAAGAGTAGCTTCCATGCTAGATGCCCTGTCCTTGAGGGTGATATGTGGTCTGCAATTAAATACTTCTATGCAAAACCAATTAGTAGAGGTAAAGTCTCAGCCACATTAGATGGTGGTGAATGCACTGATGAAGATGACAGTTGTCCCGCTTGGGCAGCCGTGGGAGAATGTCAACGAAACCCTGTGTTCATGATTGGATCTCCTGATTATTATGGTACATGTAGGAAAAGTTGTAATGCATGCTGA >Glyma16g30130.2 sequence type=CDS gene model=Glyma16g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTATCTCCCTTCTTCTCGCCCTGTTCGTGTTCTTCCTAATTGCCACTTCTCTTACCGAAAGCAGTAGGAAGGAATTAAGGAACAAGCAGGAAACTGCATTACAGATGTTAGAGCGCTCAATTCATTTTTCCAACAGAATTAATCCATCACGTGTTGTCCAAATCTCTTGGCAACCAAGGGTTTTTCTATACAAAGGGTTTTTGTCGGACAAGGAGTGTGACTACCTTGTTTCTTTGGCATATGCTGTGAAAGAAAAATCCTCAGGGAACGGTGGCCTTTCAGAGGGGGTTGAAACTTCCTTGGATATGGAAGATGATATTCTTGCAAGGATTGAAGAAAGACTTTCAGTTTGGGCTTTCCTTCCTAAAGAGTACAGCAAGCCTTTGCAGGTCATGCATTATGGGCCTGAGCAGAATGGTCGGAACTTAGATTATTTTACAAACAAAACCCAATTAGAATTAAGTGGACCTTTAATGGCAACAATTATTTTATATCTCTCAAATGATGTTACTCAAGGGGGTCAAATTCTTTTTCCTGAATCAGTGCCTGGGAGTAGCAGCTGGTCAAGTTGTAGTAATAGCAGCAATATTCTCCAACCAGTAAAAGGGAATGCAATTCTGTTTTTCTCTCTTCACCCAAGTGCTTCTCCTGACAAGAGTAGCTTCCATGCTAGATGCCCTGTCCTTGAGGGTGATATGTGGTCTGCAATTAAATACTTCTATGCAAAACCAATTAGTAGAGGTAAAGTCTCAGCCACATTAGATGGTGGTGAATGCACTGATGAAGATGACAGTTGTCCCGCTTGGGCAGCCGTGGGAGAATGTCAACGAAACCCTGTGTTCATGATTGGATCTCCTGATTATTATGGTACATGTAGGAAAAGTTGTAATGCATGCTGA >Glyma16g30130.3 sequence type=CDS gene model=Glyma16g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTATCTCCCTTCTTCTCGCCCTGTTCGTGTTCTTCCTAATTGCCACTTCTCTTACCGAAAGTAGGAAGGAATTAAGGAACAAGCAGGAAACTGCATTACAGATGTTAGAGCGCTCAATTCATTTTTCCAACAGAATTAATCCATCACGTGTTGTCCAAATCTCTTGGCAACCAAGGGTTTTTCTATACAAAGGGTTTTTGTCGGACAAGGAGTGTGACTACCTTGTTTCTTTGGCATATGCTGTGAAAGAAAAATCCTCAGGGAACGGTGGCCTTTCAGAGGGGGTTGAAACTTCCTTGGATATGGAAGATGATATTCTTGCAAGGATTGAAGAAAGACTTTCAGTTTGGGCTTTCCTTCCTAAAGAGTACAGCAAGCCTTTGCAGGTCATGCATTATGGGCCTGAGCAGAATGGTCGGAACTTAGATTATTTTACAAACAAAACCCAATTAGAATTAAGTGGACCTTTAATGGCAACAATTATTTTATATCTCTCAAATGATGTTACTCAAGGGGGTCAAATTCTTTTTCCTGAATCAGTGCCTGGGAGTAGCAGCTGGTCAAGTTGTAGTAATAGCAGCAATATTCTCCAACCAGTAAAAGGGAATGCAATTCTGTTTTTCTCTCTTCACCCAAGTGCTTCTCCTGACAAGAGTAGCTTCCATGCTAGATGCCCTGTCCTTGAGGGTGATATGTGGTCTGCAATTAAATACTTCTATGCAAAACCAATTAGTAGAGGTAAAGTCTCAGCCACATTAGATGGTGGTGAATGCACTGATGAAGATGACAGTTGTCCCGCTTGGGCAGCCGTGGGAGAATGTCAACGAAACCCTGTGTTCATGATTGGATCTCCTGATTATTATGGTACATGTAGGAAAAGTTGTAATGCATGCTGA
>Glyma16g30130.1 sequence type=predicted peptide gene model=Glyma16g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFILLFSLLICISSRKELRNKQETALQMLERSIHFSNRINPSRVVQISWQPRVFLYKGFLSDKECDYLVSLAYAVKEKSSGNGGLSEGVETSLDMEDDILARIEERLSVWAFLPKEYSKPLQVMHYGPEQNGRNLDYFTNKTQLELSGPLMATIILYLSNDVTQGGQILFPESVPGSSSWSSCSNSSNILQPVKGNAILFFSLHPSASPDKSSFHARCPVLEGDMWSAIKYFYAKPISRGKVSATLDGGECTDEDDSCPAWAAVGECQRNPVFMIGSPDYYGTCRKSCNAC* >Glyma16g30130.2 sequence type=predicted peptide gene model=Glyma16g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASISLLLALFVFFLIATSLTESSRKELRNKQETALQMLERSIHFSNRINPSRVVQISWQPRVFLYKGFLSDKECDYLVSLAYAVKEKSSGNGGLSEGVETSLDMEDDILARIEERLSVWAFLPKEYSKPLQVMHYGPEQNGRNLDYFTNKTQLELSGPLMATIILYLSNDVTQGGQILFPESVPGSSSWSSCSNSSNILQPVKGNAILFFSLHPSASPDKSSFHARCPVLEGDMWSAIKYFYAKPISRGKVSATLDGGECTDEDDSCPAWAAVGECQRNPVFMIGSPDYYGTCRKSCNAC* >Glyma16g30130.3 sequence type=predicted peptide gene model=Glyma16g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASISLLLALFVFFLIATSLTESRKELRNKQETALQMLERSIHFSNRINPSRVVQISWQPRVFLYKGFLSDKECDYLVSLAYAVKEKSSGNGGLSEGVETSLDMEDDILARIEERLSVWAFLPKEYSKPLQVMHYGPEQNGRNLDYFTNKTQLELSGPLMATIILYLSNDVTQGGQILFPESVPGSSSWSSCSNSSNILQPVKGNAILFFSLHPSASPDKSSFHARCPVLEGDMWSAIKYFYAKPISRGKVSATLDGGECTDEDDSCPAWAAVGECQRNPVFMIGSPDYYGTCRKSCNAC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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