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Report for Sequence Feature Glyma16g29930

Feature Type:gene_model
Chromosome:Gm16
Start:33589335
stop:33590105
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g29930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G23950AT Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:8082789-8083448 FORWARD LENGTH=219 SoyBaseE_val: 5.00E-69ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00168PFAM C2 domain JGI ISS
UniRef100_I1MPJ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MPJ9_SOYBN SoyBaseE_val: 2.00E-132ISS
UniRef100_Q9FF85UniRef Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB80929.1 n=2 Tax=Arabidopsis thaliana RepID=Q9FF85_ARATH SoyBaseE_val: 3.00E-66ISS

Expression Patterns of Glyma16g29930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g29930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g180300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g29930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g29930
>Glyma16g29930.2   sequence type=CDS   gene model=Glyma16g29930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCGCTACGAACTCGAGCTGAAGCTCGCATCAGCGCGCGGCCTCAAGAACGTGAACTGGCGCCACGGCCCTAACCGCCCATACGCCGTCGTTTGGGTGGACCCCAGGAACAAGTGTTCCACGCGTGTAGACGAAGACGGCGATACCGAAGCCACCTGGGACCAAACCCTACTTATTCCTCTCCCCCCGGAGCCCCTCGAGAATCTCACCCTCTACGTGGACGCGGTCCACGCCGGCTCCGAGGAAGATACCGAGCCGCTTATTGGAGCGGCTCAGCTCAAGCTCGTCGATATTCTCGACGAGGTCGGAGTCGGCGAGAGCGTGAACCGCACGCTCTCGCTGAAGCGTCCCTCCGGGAGACCCCAAGGGAAGGTCGACGTAAATGTTGTTATAAGAGAGTTTGGCTATCGTGCGCATGGCGGGTACTACGCACCTTCTTATGGCGGGAGTGGTTATGGTTACGGTTATGATCAAGAAGAGAAGAAGAGTAATAAGTTTGGGGGCATGGGGACGGGATTGGCTGTGGGCGCGGTTGCTGGGGTTCTAGGAGGAATCGCGCTTGTGGAAGGTGCTGAGTATGTTGAGGACAAGATTACTGATGACGTGGCAGAGAGGGTTGAGGATGATCTTGGTTATGATGAAGATGATTTCTAG
Predicted protein sequences of Glyma16g29930
>Glyma16g29930.2   sequence type=predicted peptide   gene model=Glyma16g29930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRYELELKLASARGLKNVNWRHGPNRPYAVVWVDPRNKCSTRVDEDGDTEATWDQTLLIPLPPEPLENLTLYVDAVHAGSEEDTEPLIGAAQLKLVDILDEVGVGESVNRTLSLKRPSGRPQGKVDVNVVIREFGYRAHGGYYAPSYGGSGYGYGYDQEEKKSNKFGGMGTGLAVGAVAGVLGGIALVEGAEYVEDKITDDVAERVEDDLGYDEDDF*






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