SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25720 | AT | Annotation by Michelle Graham. TAIR10: glutaminyl cyclase | chr4:13099929-13102470 REVERSE LENGTH=320 | SoyBase | E_val: 6.00E-112 | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0017186 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016603 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutaminyl-peptide cyclotransferase activity | SoyBase | N/A | ISS |
| PF05096 | PFAM | Glutamine cyclotransferase | JGI | ISS | |
| UniRef100_I1MPI2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MPI2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O81226 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamine cyclotransferase n=1 Tax=Carica papaya RepID=O81226_CARPA | SoyBase | E_val: 1.00E-115 | ISS |
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Glyma16g29760 not represented in the dataset |
Glyma16g29760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g24421 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g178900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g29760.2 sequence type=transcript gene model=Glyma16g29760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTGAATTTATAAGGTGTTAATATTTAGATCCTTTAAAAGATGGAAACATAAAATTTTGTGCGACAAATGGCACCCTATTCACCCAAGTAACTTGTCAGTCTGTCACTGTCATGTGAAAGAGACAAGCACGCTTCTGGCGCATGCTAGCACCATCGCTGACCTGCCACGACCATGAAGAACCATTGCTTCCATGGGAACCAAATCACTGAAACGGAGAGCTCGTGAGTCCCAGAACCCTCCCATGGCCGCCGCGGATCCTCCGCGGCGCAAGCCTCTCTCTTACGCCAAGGCATCCGTAGTTCTCTCCGCTTTTCTCGTTGTCTCCGTCATCGCTCCCTTGGTCCTTTCTTCGAACAAGTTTCGCGCGTTCCAACGCCGTGTTTCGTACGAGACGATCACCGTCGTCAACGTGTTCCCTCACGACCCAGAAGCCTTCACCCAGGGCCTTGTTTACAATGGAAATGACACCTTATTTGAGTCAACTGGTCTTTATGGGAAGTCCTCTGTCCGTAAAGTTGCTCTTCATACTGGGAAGCTTGAGGATGTGCAGAAGATGGATAGTTCATTATTTGGGGAAGGTTTAACTCTCCTCAATAATAGGCTGTTCCAAGTAACTTGGTTGCAGAAAGCTGGTTTCATATACAACCCGAAAAATTTAAGAAAGATTGGGACATTTAATCATGATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGTTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATGACTGACTGCATTGTAAGAATCTCTCCCCATGATGGCAATGTTCTAGGATGGATTCTCCTCCAAAATTTAAGGAAAGAACTTATCGAAGCTGGGAATAATTGACTGGAAAACTGTGGCCAGAGCTATATGAAATCAAGGTTTCTCCTGTAAACAAACCAATTGAAGAAGGGATCATTGAGAAGCTTTGCTTGCGTAGCCCTTTCAAATTTACATGATTGATTTTTTCTGTTTCTGCTCTAATTTTTGAAACCCACTTGGGAGAATGCGAGCTGAACTGAGTTTTGGGAATAGTATTATGACATGGTCATTTTGAAGAGATATTCTGTTGGGAGAATGCTGCCTCTTTCATTGTTTGGGCATCTATTATGCCCTACCCATTATAGTATCATTCTTCCGTAGCAGGTCAAGATTTTTAATTAAAGTAAGGGAGAGGTCAATAATCTTTCAGTATGATAGGGTTGATTTTGTAAGTAACTGGAAAGTGCAATGGAAAAGGCAATTTGAGATGTTATGTGTTGCAAAAGAATGGAAATACAAGCAAAACAAAAAGAAAGTATGGATGGCTTTAGTGGTTCAATTTGAGGTGTCATCACAAGTTAAGAATTGGTTCACCAGACAGAGATTTGTAGATACTATATTGAGTACACTGTATTATGTATTTAAGATGGTGGCGTAGTTAGGAAAGGATATAAACATTCAAAGTTTAATAGATTGATTAAGTGTTTTCTAGAGATGTTCTTCACCTTTTTCGGCTGTTTAATGTGTATTGAATATAAATATTTTCCCGCTTAAGATTCTTTTCAGAAGACGGTCATTTCTTTTTATTCTC
>Glyma16g29760.1 sequence type=CDS gene model=Glyma16g29760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACCAAATCACTGAAACGGAGAGCTCGTGAGTCCCAGAACCCTCCCATGGCCGCCGCGGATCCTCCGCGGCGCAAGCCTCTCTCTTACGCCAAGGCATCCGTAGTTCTCTCCGCTTTTCTCGTTGTCTCCGTCATCGCTCCCTTGGTCCTTTCTTCGAACAAGTTTCGCGCGTTCCAACGCCGTGTTTCGTACGAGACGATCACCGTCGTCAACGTGTTCCCTCACGACCCAGAAGCCTTCACCCAGGGCCTTGTTTACAATGGAAATGACACCTTATTTGAGTCAACTGGTCTTTATGGGAAGTCCTCTGTCCGTAAAGTTGCTCTTCATACTGGGAAGCTTGAGGATGTGCAGAAGATGGATAGTTCATTATTTGGGGAAGGTTTAACTCTCCTCAATAATAGGCTGTTCCAAGTAACTTGGTTGCAGAAAGCTGGTTTCATATACAACCCGAAAAATTTAAGAAAGATTGGGACATTTAATCATGATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGTTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATGACTGACTGCATTGTAAGAATCTCTCCCCATGATGGCAATGTTCTAGGATGGATTCTCCTCCAAAATTTAAGGAAAGAACTTATCGAAGCTGGGAATAATAATATTAATGTTTTGAATGGGATAGCATGGGATGGTGAGCAAAAGCGGATATTTGTGACTGGAAAACTGTGGCCAGAGCTATATGAAATCAAGGTTTCTCCTGTAAACAAACCAATTGAAGAAGGGATCATTGAGAAGCTTTGCTTGCGTAGCCCTTTCAAATTTACATGA >Glyma16g29760.2 sequence type=CDS gene model=Glyma16g29760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACCAAATCACTGAAACGGAGAGCTCGTGAGTCCCAGAACCCTCCCATGGCCGCCGCGGATCCTCCGCGGCGCAAGCCTCTCTCTTACGCCAAGGCATCCGTAGTTCTCTCCGCTTTTCTCGTTGTCTCCGTCATCGCTCCCTTGGTCCTTTCTTCGAACAAGTTTCGCGCGTTCCAACGCCGTGTTTCGTACGAGACGATCACCGTCGTCAACGTGTTCCCTCACGACCCAGAAGCCTTCACCCAGGGCCTTGTTTACAATGGAAATGACACCTTATTTGAGTCAACTGGTCTTTATGGGAAGTCCTCTGTCCGTAAAGTTGCTCTTCATACTGGGAAGCTTGAGGATGTGCAGAAGATGGATAGTTCATTATTTGGGGAAGGTTTAACTCTCCTCAATAATAGGCTGTTCCAAGTAACTTGGTTGCAGAAAGCTGGTTTCATATACAACCCGAAAAATTTAAGAAAGATTGGGACATTTAATCATGATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGTTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATGACTGACTGCATTGTAAGAATCTCTCCCCATGATGGCAATGTTCTAGGATGGATTCTCCTCCAAAATTTAAGGAAAGAACTTATCGAAGCTGGGAATAATTGA
>Glyma16g29760.1 sequence type=predicted peptide gene model=Glyma16g29760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTKSLKRRARESQNPPMAAADPPRRKPLSYAKASVVLSAFLVVSVIAPLVLSSNKFRAFQRRVSYETITVVNVFPHDPEAFTQGLVYNGNDTLFESTGLYGKSSVRKVALHTGKLEDVQKMDSSLFGEGLTLLNNRLFQVTWLQKAGFIYNPKNLRKIGTFNHDMKDGWGLATDGTLLFGSDGSSTLYQIDPQTFKVVSKQVVYYKGHQVHNLNELEYINGEVWANVFMTDCIVRISPHDGNVLGWILLQNLRKELIEAGNNNINVLNGIAWDGEQKRIFVTGKLWPELYEIKVSPVNKPIEEGIIEKLCLRSPFKFT* >Glyma16g29760.2 sequence type=predicted peptide gene model=Glyma16g29760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTKSLKRRARESQNPPMAAADPPRRKPLSYAKASVVLSAFLVVSVIAPLVLSSNKFRAFQRRVSYETITVVNVFPHDPEAFTQGLVYNGNDTLFESTGLYGKSSVRKVALHTGKLEDVQKMDSSLFGEGLTLLNNRLFQVTWLQKAGFIYNPKNLRKIGTFNHDMKDGWGLATDGTLLFGSDGSSTLYQIDPQTFKVVSKQVVYYKGHQVHNLNELEYINGEVWANVFMTDCIVRISPHDGNVLGWILLQNLRKELIEAGNN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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