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Report for Sequence Feature Glyma16g29400

Feature Type:gene_model
Chromosome:Gm16
Start:33218464
stop:33219888
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g29400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16520AT Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 88A1 | chr3:5619355-5620833 REVERSE LENGTH=462 SoyBaseE_val: 5.00E-123ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008194GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
GO:0080043GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity SoyBaseN/AISS
GO:0080044GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 7-O-glucosyltransferase activity SoyBaseN/AISS
GO:0080045GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 3'-O-glucosyltransferase activity SoyBaseN/AISS
GO:0080046GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 4'-O-glucosyltransferase activity SoyBaseN/AISS
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI ISS
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI ISS
PTHR11926:SF15Panther UDP-GLUCURONOSYLTRANSFERASE RELATED JGI ISS
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI ISS
UniRef100_A6BM07UniRef Annotation by Michelle Graham. Best UniRef hit: UDP-glucose:isoflavone 7-O-glucosyltransferase n=1 Tax=Glycine max RepID=A6BM07_SOYBN SoyBaseE_val: 0ISS
UniRef100_A6BM07UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose:isoflavone 7-O-glucosyltransferase n=1 Tax=Glycine max RepID=A6BM07_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma16g29400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g29400 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g175600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g29400
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g29400
>Glyma16g29400.1   sequence type=CDS   gene model=Glyma16g29400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGACACCATTGTTCTATACCCTAATCTTGGTAGGGGACACCTAGTTTCCATGGTGGAGTTGGGAAAACTCATACTGACCCACCACCCTTCACTTTCCATCACTATTCTCATCCTCACTCCTCCCACCACCCCTTCCACCACCACCACCACCTTAGCCTGCGACTCTAATGCTCAATACATCGCCACCGTCACCGCCACCACTCCCTCCATCACGTTCCACCGCGTTCCCCTCGCCGCACTCCCCTTCAACACCCCCTTCCTCCCCCCTCACCTCCTCTCCCTCGAACTCACCCGCCACAGCACGCAAAACATCGCCGTTGCACTCCAAACCCTCGCCAAAGCTTCGAACCTCAAAGCCATCGTCATTGACTTCATGAACTTCAACGACCCCAAAGCCCTCACTGAAAATCTCAACAACAACGTCCCCACTTACTTCTACTACACTTCTGGCGCCTCCACTCTCGCTTTACTCCTTTACTACCCCACCATTCACCCAACCCTCATAGAAAAAAAGGATACAGACCAACCTTTGCAAATCCAAATCCCTGGATTATCCACAATTACAGCCGATGATTTTCCAAACGAATGCAAAGACCCCTTGAGTTACGCTTGCCAAGTCTTCCTTCAGATAGCGGAAACCATGATGGGTGGTGCCGGGATTATAGTAAACACATTTGAAGCCATTGAAGAAGAAGCCATCAGAGCGTTAAGTGAGGATGCGACAGTACCACCACCCTTGTTTTGTGTCGGACCCGTGATTTCTGCACCGTATGGAGAAGAAGACAAAGGGTGTCTGAGTTGGCTAAACTTGCAACCGAGTCAGAGCGTCGTGTTGCTGTGTTTCGGAAGCATGGGAAGGTTCTCGAGGGCTCAGTTGAAGGAGATAGCTATTGGGTTGGAGAAGAGTGAGCAAAGGTTCTTGTGGGTTGTGAGAACCGAGTTGGGTGGTGCTGATGACTCGGCGGAGGAACTGAGTCTGGACGAGTTGCTGCCAGAAGGGTTTTTGGAGAGGACCAAGGAGAAGGGAATGGTGGTGAGGGACTGGGCCCCACAGGCGGCGATTCTGAGTCACGACTCGGTGGGTGGGTTCGTGACTCACTGCGGTTGGAACTCGGTGTTGGAAGCGGTGTGTGAAGGGGTGCCGATGGTGGCGTGGCCTCTCTACGCGGAGCAGAAGATGAACAGGATGGTTATGGTGAAGGAAATGAAGGTGGCTTTGGCGGTGAACGAGAACAAGGATGGGTTCGTGAGTTCGACTGAGTTGGGGGACCGAGTTAGGGAACTCATGGAATCAGACAAAGGGAAAGAGATTCGTCAGAGGATTTTCAAGATGAAAATGAGTGCTGCGGAAGCAATGGCTGAAGGCGGAACATCACGTGCTTCGTTGGATAAGTTGGCTAAGCTGTGGAAACAGAGTTGA
Predicted protein sequences of Glyma16g29400
>Glyma16g29400.1   sequence type=predicted peptide   gene model=Glyma16g29400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDTIVLYPNLGRGHLVSMVELGKLILTHHPSLSITILILTPPTTPSTTTTTLACDSNAQYIATVTATTPSITFHRVPLAALPFNTPFLPPHLLSLELTRHSTQNIAVALQTLAKASNLKAIVIDFMNFNDPKALTENLNNNVPTYFYYTSGASTLALLLYYPTIHPTLIEKKDTDQPLQIQIPGLSTITADDFPNECKDPLSYACQVFLQIAETMMGGAGIIVNTFEAIEEEAIRALSEDATVPPPLFCVGPVISAPYGEEDKGCLSWLNLQPSQSVVLLCFGSMGRFSRAQLKEIAIGLEKSEQRFLWVVRTELGGADDSAEELSLDELLPEGFLERTKEKGMVVRDWAPQAAILSHDSVGGFVTHCGWNSVLEAVCEGVPMVAWPLYAEQKMNRMVMVKEMKVALAVNENKDGFVSSTELGDRVRELMESDKGKEIRQRIFKMKMSAAEAMAEGGTSRASLDKLAKLWKQS*






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