Glyma16g29030 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma16g29030

Feature Type:	gene_model
Chromosome:	Gm16
Start:	32932564
stop:	32936823
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g29030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24030	AT	Annotation by Michelle Graham. TAIR10: SLAC1 homologue 3 \| chr5:8118618-8120993 REVERSE LENGTH=635	SoyBase	E_val: 0	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0006873	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular ion homeostasis	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
PF03595	PFAM	C4-dicarboxylate transporter/malic acid transport protein	JGI		ISS
UniRef100_G7KJM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Medicago truncatula RepID=G7KJM6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MPD1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MPD1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g29030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g29030

Paralog	Evidence	Comments
Glyma09g23220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g29030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g173600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g29030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g29030

Limit To All Plant Sequences

>Glyma16g29030.1   sequence type=CDS   gene model=Glyma16g29030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACAACATAAACATTGAAATTGCAGAACAAGGCTCTCCTGAAGTTCCATCACTCATAAGGTATATATCATCAAGTGATGTTGCGGGCTTTGACACTGCTGACTCTCAACCTCCCAGCCCATATGCCCAAGGAAGTGAAGAAACCTCACCAAGAAGACAACATGATGAACCTGTAGTCATCAATCATCAAAGGAAGTATTCTATCAGCATGCCACTTTCTTCTGAACAAGTTCAGCTTCAACCACTGGACAACAAAACAGATGGTATTCCCATTTCCTCTTCTCAATCAGGAACTGCTAACTCCAACCATCCACAGGCATCAAAATGTTACTCTCAACCAATGCCAAAAGGCTATGTGCCCCAAGAGGCAGATAATGGAGTCAAAATAGATAACCATCCTGGCATCAAAGCATTCAAGGACAAGAGGTTTGATTCTTTTAAAACATGGTCTGGAAGACTTGAGAGACAATTAACAATTCTACGTGGAAAGTCACCCAGAGCAACTGCACAAGATGGTAACAACAACTCCAGTAGTACTGATAGGCCATTACCTGTGGATCGGTATTTTGATGCATTGGAAGGTCCAGAGTTAGAAACTCTCAGGGCTTCAGAAGAGACAGTGCTTCCTCAGGACAAGCAATGGCCATTTCTTCTTCGGTTTCCTATTTCATCCTTTGGTATATGCCTTGGAGTTAGCAGCCAAGCAATTCTCTGGAAAGCACTGGCCACATCTCCTTCCACTCAATTTCTTCACATAAGCCTCAAAGTCAACTTAATCTTATGGTTCATATCAATTGCTCTTGTTACCACAGTTTTCACCATCTATCTTCTAAAAATCATTCTCTACTTTGAAGCAGTTCGTCGTGAGTACTACCATCCAATCCGTGTCAACTTCTTCTTTGCACCATGGATAGCTCTCTTGTTCTTGGCTCTTGGAGTTCCACCATCAGTTACCAAAGACTTGCTCCATGTTCTTTGGTACATTCTAATGACACCAATATTGTGTCTTGAACTTAAGATCTATGGACAGTGGATGTCTGGGGGCCAGAGGAGGCTCTCTAAGGTGGCCAATCCAACAAACCATTTATCAATTGTTGGAAACTTTGTAGGGGCATTACTTGGGGCTTCAATGGGCCTAAAAGAAGGGCCCATTTTCTTCTTTGCCATTGGCCTGGCCCACTACACTGTCATGTTTGTAACTCTCTACCAGAGACTTCCAACAAATGAGACCCTCCCAAAAGAGCTCCATCCTGTGTTCTTTCTGTTTGTTGCAGCACCTAGTGTTGCTTCTATGGCATGGGCCAATATTCAGGGTTCTTTTGATTATGGATCTCGAATTGCCTATTTCATTGCCCTCTTCCTTTATTTTTCATTGGCTGTCCGGATCAATTTTTTCAGAGGATTCACATTCTCTCTTGCATGGTGGGCCTATACTTTTCCAATGACTGGTGCAGCAATTGCAACCGTTAGATACTCAAATCGGGTCACAAATCCAGTTACCAAGACACTGTGTGTCATACTGAGTCTCATCTCCACACTCATAGTAATAGCTTTGCTTGTATCAACTATATTGCATGGCTTTGTCTTCAGAAACCTCTTCCCCAATGACCTTGCCATTGCCATAAGTTACAGAAAGAGAAGGCCACAAAAGAAGTGGCTAGGTCTTAGATACAGGAGCCATGATTCCAAAGAGATTGAAAATTACTTGAAGTTTGTGAACTCGGATAAAATTGATTTAGAAGCTTCTGCCCCACTACCAAATGGCACAGAAGATACTCCATCTATCTGA

Predicted protein sequences of Glyma16g29030

Limit To All Plant Sequences

>Glyma16g29030.1   sequence type=predicted peptide   gene model=Glyma16g29030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENNINIEIAEQGSPEVPSLIRYISSSDVAGFDTADSQPPSPYAQGSEETSPRRQHDEPVVINHQRKYSISMPLSSEQVQLQPLDNKTDGIPISSSQSGTANSNHPQASKCYSQPMPKGYVPQEADNGVKIDNHPGIKAFKDKRFDSFKTWSGRLERQLTILRGKSPRATAQDGNNNSSSTDRPLPVDRYFDALEGPELETLRASEETVLPQDKQWPFLLRFPISSFGICLGVSSQAILWKALATSPSTQFLHISLKVNLILWFISIALVTTVFTIYLLKIILYFEAVRREYYHPIRVNFFFAPWIALLFLALGVPPSVTKDLLHVLWYILMTPILCLELKIYGQWMSGGQRRLSKVANPTNHLSIVGNFVGALLGASMGLKEGPIFFFAIGLAHYTVMFVTLYQRLPTNETLPKELHPVFFLFVAAPSVASMAWANIQGSFDYGSRIAYFIALFLYFSLAVRINFFRGFTFSLAWWAYTFPMTGAAIATVRYSNRVTNPVTKTLCVILSLISTLIVIALLVSTILHGFVFRNLFPNDLAIAISYRKRRPQKKWLGLRYRSHDSKEIENYLKFVNSDKIDLEASAPLPNGTEDTPSI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain