SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G49142 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18215788-18217848 REVERSE LENGTH=686 | SoyBase | E_val: 0 | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24015:SF105 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01535 | PFAM | PPR repeat | JGI | ISS | |
| UniRef100_B9RIP1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RIP1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MPC3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MPC3_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma16g28950 not represented in the dataset |
Glyma16g28950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g172800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g28950.1 sequence type=CDS gene model=Glyma16g28950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCCTTTTCATCCTCTGACTCACCAATTTCCCAAGTTACAAGCCTTGGTTTCATCAATTCGAAAATCGTTGGTGTCCCCACAAAACCCAGTTCTTGTATTGGAGCTTCTGGGCAAAGTGTTAGACCAATACCCAGACATCAAAACCTTGAAAAATGTGCATTCCAAGGTTTTTAATCTTAGTTTTCACGAAAATCCATCTCTGGGGATCAAACTCATGCGGGCTTATGCTGCCCGTGGAGAACCCGGGTTGGCACGCAATGTGTTTGATGTAATTCCTGAGAGGAATGTTATTTTCTATAATGTCATGATCAGAAGCTATATGAATAACCATTTGTACGATGATGCATTGCTTGTTTTTAGGGACATGGTTAGTGGTGGTTTTAGCCCTGATCATTATACATACCCTTGTGTCTTGAAGGCTTGTTCTTGCTCTGACAATTTGAGGATTGGGTTGCAGCTTCATGGAGCTGTGTTTAAGGTTGGGCTTGATTTGAATTTGTTTGTTGGGAATGGTCTTATTGCTTTGTATGGGAAGTGTGGTTGCTTGCCTGAGGCACGGTGTGTTCTTGATGAAATGCAGAGCAAGGATGTTGTTTCATGGAACTCAATGGTTGCTGGCTATGCACAGAATATGCAGTTTGATGATGCATTGGATATTTGCCGAGAAATGGATGGTGTGAGGCAGAAGCCTGATGCTTGTACAATGGCTAGTCTCCTGCCAGCAGTAACTAACACTTCCTCGGAAAATGTTTTGTATGTTGAGGAGATGTTCATGAATTTGGAGAAGAAAAGTTTGGTCTCATGGAATGTCATGATAAGTGTATATATGAAAAACTCAATGCCTGGAAAATCTGTAGATCTATATTTACAAATGGGGAAATGTGAAGTGGAACCAGATGCAATCACTTGTGCTAGTGTTCTTCGAGCGTGTGGGGATCTTTCAGCTTTGTTGTTAGGAAGGAGGATTCATGAATATGTTGAGAGAAAGAAGCTATGTCCAAATATGCTTCTGGAGAATTCACTGATAGATATGTATGCTAGGTGTGGATGTCTAGAAGATGCGAAAAGAGTTTTTGACAGAATGAAGTTTCGTGATGTTGCATCATGGACTTCATTGATATCTGCCTATGGTATGACTGGACAAGGCTATAATGCTGTGGCACTCTTCACGGAAATGCAAAATTCAGGTCAAAGTCCAGATTCTATTGCCTTTGTCGCAATTCTCTCAGCTTGTAGTCATTCAGGATTACTCAATGAAGGAAAGTTTTACTTTAAGCAGATGACAGATGATTACAAAATAACACCAATAATTGAACACTTTGCTTGCTTGGTGGATCTATTAGGAAGATCAGGACGAGTGGATGAGGCCTATAATATCATCAAACAGATGCCAATGAAGCCTAATGAAAGAGTTTGGGGGGCACTGCTTAGTTCGTGTCGGGTGTACTCCAACATGGATATTGGGATTTTAGCTGCTGACAAACTACTTCAGTTGGCTCCTGAGGAATCAGGTTACTATGTGTTGTTATCTAATATTTATGCAAAGGCCGGTAGATGGACAGAAGTAACAGCTATTCGATCACTAATGAAGAGAAGAAGAATTCGGAAAATGCCCGGCATCAGCAATGTTGAGCTGAATAACCAGGTCCACACCTTTCTTGCAGGTGATACGTACCACCCACAGTCAAAAGAGATATATGAAGAGTTAAGTGTGCTGGTGGGGAAGATGAAAGAGTTAGGTTATGTGCCCAAGACTGATTCTGCCCTTCATGATGTGGAAGAGGAGGATAAAGAATGCCATCTAGCTGTTCATAGCGAGAAGTTAGCTATTGTCTTTGCTATTTTGAATACCCAAGAATCTCCAATCAGAATTACCAAAAACCTCCGTGTTTGTGGAGATTGTCATATTGCTGCCAAGCTTATCTCCAAGATAGTTCAACGTGAAATTGTCATCAGGGACACCAATCGATTCCATCATTTTAAGGATGGTATATGCTCTTGTGGTGATTATTGGTGA
>Glyma16g28950.1 sequence type=predicted peptide gene model=Glyma16g28950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPFHPLTHQFPKLQALVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQESPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
