Report for Sequence Feature Glyma16g28370
Feature Type: gene_model
Chromosome: Gm16
Start: 32337760
stop: 32342352
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g28370
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G43700 AT
Annotation by Michelle Graham. TAIR10: VIRE2-interacting protein 1 | chr1:16484352-16486017 FORWARD LENGTH=341
SoyBase E_val: 1.00E-67 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0008272 GO-bp
Annotation by Michelle Graham. GO Biological Process: sulfate transport
SoyBase N/A ISS
GO:0009294 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation
SoyBase N/A ISS
GO:0009410 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus
SoyBase N/A ISS
GO:0009970 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to sulfate starvation
SoyBase N/A ISS
GO:0030968 GO-bp
Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response
SoyBase N/A ISS
GO:0045596 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of cell differentiation
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0051170 GO-bp
Annotation by Michelle Graham. GO Biological Process: nuclear import
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
GO:0046983 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity
SoyBase N/A ISS
GO:0051019 GO-mf
Annotation by Michelle Graham. GO Molecular Function: mitogen-activated protein kinase binding
SoyBase N/A ISS
PTHR22952 Panther
CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED
JGI ISS
PTHR22952:SF39 Panther
ATBZIP52 (ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPE
JGI ISS
PF00170 PFAM
bZIP transcription factor
JGI ISS
UniRef100_I1MP83 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MP83_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q0GPF5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP131 n=2 Tax=Glycine max RepID=Q0GPF5_SOYBN
SoyBase E_val: 7.00E-166 ISS
Expression Patterns of Glyma16g28370
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma16g28370
Paralog Evidence Comments
Glyma02g09140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g28370 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g168400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g28370
Coding sequences of Glyma16g28370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g28370.2 sequence type=CDS gene model=Glyma16g28370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGCATTTTTTTACCATTGGCTATACACAACTTCCCTCAACTTTTTGTTCACTAAAGTCAATTTTCTTCTTTGCTTCCACTTGTTCTTCAGCAAACTCACACAACCACCTGAAAACTGAATCACAACCCTCTCTTCTTCTCTTACTCTCTCTTTCTCTTTGGTATCATCATTCATCACCACACAAGAGAAAAAAAAAAGAAGAAAGAACAAATAAACCTTTTTTTTTTAAGAGAAAGAAAGAAAGAAAAGGAAAAATAAAGTTTTTTTTTTTTTTTTTTAGTTTTTCGATGGACCCGAAGTTCATCGGAAAGCCGCTGGCGATGGTGGACCTGGACCGGGACCGGATGTCGGAGCGTGGGTCCCACCACCGGCGTTCCCACTCCGACACCTCCTTCCGCTTCGCTGCCAACTTCGACGAGCTTCTCCTCTTCGACCCCTCCGACCTCGACATCTCCGGCCTCCCGTCGCCGCTCCCTCTGCCGTCGCAGGGCGCCGGCGGCGTGGTTCCGATGTCCGTCGTCTCCGAGGAGTCTGGCGGACGGCCGAGGCGGTCCGGGGCTTCCGCCGGCGGGCACCTGCGGAGTCTGTCGGTGGATTCTGACTTCTTCGATGGGCTCGGGTCCGGCGTCGGCGGCGATGAGAGAGGTGCCGGGAATGGCGGCGGCGAGCGGCACAGCAACTCGATGGAGGGGTCGTCGACGACGTCGTTTGAGGCGGACTCGGCGACGATGATGGATGGCATGAAGAAAGCTACGGCCCCTGATAAACTTGCTGAGCTTGCTCTTACGGATCCCAAAAGAGCTAAGAGGATGCTTGCTAACAGGCAATCTGCTGCAAGATCTAAGGAGAGGAAGATTCGTTACACAAGTGAGTTGGAGAAGAAGGTGCAGACTCTTCAGACTGAAGCAACTAACCTTTCTGCACAGCTTACCATGCTTCAGAGAGACACTACAGATTTGACTGCACAGAATAAGGAGCTCAAACTGCGCTTACAGGCTTTTGAGCAAGAAGCACAGCTTAGAGAAGATCTCAATGAGGCATTGAAGAAAGAACTGCAGCGCCTTAGGGTACAAAGTGCTTGCTGGGGTGCTATGACTGGTGGTAACCCTTCTTTTGGTGGGATATTCAACCAGTTGGCTTCCCAGTTAGCCATGCAACAGTTGTCTAATTCTGTGCCCCATCAGCACCAGACACAACACCAGCCACAGGTTGGCATGCCTCCTCCCCCCTCTGGACAGAAGCACCCTAAGTTCATGGACTTCAATCAGCAGAAGTAG
Predicted protein sequences of Glyma16g28370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g28370.2 sequence type=predicted peptide gene model=Glyma16g28370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMHFFTIGYTQLPSTFCSLKSIFFFASTCSSANSHNHLKTESQPSLLLLLSLSLWYHHSSPHKRKKKEERTNKPFFFKRKKERKGKIKFFFFFFSFSMDPKFIGKPLAMVDLDRDRMSERGSHHRRSHSDTSFRFAANFDELLLFDPSDLDISGLPSPLPLPSQGAGGVVPMSVVSEESGGRPRRSGASAGGHLRSLSVDSDFFDGLGSGVGGDERGAGNGGGERHSNSMEGSSTTSFEADSATMMDGMKKATAPDKLAELALTDPKRAKRMLANRQSAARSKERKIRYTSELEKKVQTLQTEATNLSAQLTMLQRDTTDLTAQNKELKLRLQAFEQEAQLREDLNEALKKELQRLRVQSACWGAMTGGNPSFGGIFNQLASQLAMQQLSNSVPHQHQTQHQPQVGMPPPPSGQKHPKFMDFNQQK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
