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Report for Sequence Feature Glyma16g28340

Feature Type:gene_model
Chromosome:Gm16
Start:32312765
stop:32313870
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g28340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G43660AT Annotation by Michelle Graham. TAIR10: Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198 SoyBaseE_val: 4.00E-98ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4473 KOG Uncharacterized membrane protein JGI ISS
PF01988PFAM VIT family JGI ISS
UniRef100_G7ID02UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nodulin-like protein n=1 Tax=Medicago truncatula RepID=G7ID02_MEDTR SoyBaseE_val: 9.00E-112ISS
UniRef100_I1MP78UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MP78_SOYBN SoyBaseE_val: 8.00E-167ISS

Expression Patterns of Glyma16g28340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g28340
ParalogEvidenceComments
Glyma02g09110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g28340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g168200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g28340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g28340
>Glyma16g28340.1   sequence type=CDS   gene model=Glyma16g28340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCAAATCAAGCATCCCTTAACCTTAACCAAGCCAAATTTGCCCTTCCAACCAATGACGACCTTGAGCAACAACAACAACAAGCAACAACAACTCTAGAGATTGAATCTGATGAGGACACCTTTGACTACTCAAAAAGATCTCAATGGCTCCGCGCCGCTGTTCTGGGAGCCAATGATGGGTTGGTCTCAACAGCATCAATCATGATGGGTGTTGGAGCAGTGAAGCATGACATCAAGGCCATGATCCTATCAGGGTTTGCAGGGTTGGTGGCAGGGGCATGTAGCATGGCCATAGGTGAGTTTGTGTCTGTTTACTCACAACTAGACATTGAGGTTGCTCAAAGGAAGAGGGAGAAGGAAAGGGGCCAAAGAAGAGTGAGAGATCCAGAGGAAGACACCAATGAAGAGAAAGAGAGTTTGCCAAACCCTTTGCAAGCAGCAGCAGCCTCAGCTTTGGCCTTTTCTGTTGGTGCAATGGTGCCATTGCTTGCAGCGTCATTTATAAGGGAATATAAGGTGAGGCTTGGAGTGATTGTTGCTGCTGTGACTTTTGCTTTGGTGGTGTTTGGTTGGTTAGGGGCTGTGTTGGGTAAGGCTCCAGTGTTGAGGTCTGCTTTGAGGGTCTTGTTTGGGGGTTGGATGGCCATGGCAATCACTTTTGGGTTAACCAAGTTGATTGGATCAAGTGCACTTTAG
Predicted protein sequences of Glyma16g28340
>Glyma16g28340.1   sequence type=predicted peptide   gene model=Glyma16g28340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNQASLNLNQAKFALPTNDDLEQQQQQATTTLEIESDEDTFDYSKRSQWLRAAVLGANDGLVSTASIMMGVGAVKHDIKAMILSGFAGLVAGACSMAIGEFVSVYSQLDIEVAQRKREKERGQRRVRDPEEDTNEEKESLPNPLQAAAASALAFSVGAMVPLLAASFIREYKVRLGVIVAAVTFALVVFGWLGAVLGKAPVLRSALRVLFGGWMAMAITFGLTKLIGSSAL*






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