Glyma16g28070 - SoyBase

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Report for Sequence Feature Glyma16g28070

Feature Type:	gene_model
Chromosome:	Gm16
Start:	31995297
stop:	31996638
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g28070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34430	AT	Annotation by Michelle Graham. TAIR10: light-harvesting chlorophyll-protein complex II subunit B1 \| chr2:14524818-14525618 FORWARD LENGTH=266	SoyBase	E_val: 8.00E-170	ISS
GO:0009765	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting	SoyBase	N/A	ISS
GO:0009769	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting in photosystem II	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030076	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex	SoyBase	N/A	ISS
GO:0042651	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid membrane	SoyBase	N/A	ISS
GO:0016168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding	SoyBase	N/A	ISS
PTHR21649	Panther	CHLOROPHYLL A/B BINDING PROTEIN	JGI		ISS
PF00504	PFAM	Chlorophyll A-B binding protein	JGI		ISS
UniRef100_Q43437	UniRef	Annotation by Michelle Graham. Best UniRef hit: Photosystem II type I chlorophyll a/b-binding protein n=1 Tax=Glycine max RepID=Q43437_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q43437	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem II type I chlorophyll a/b-binding protein n=1 Tax=Glycine max RepID=Q43437_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g28070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g28070 not represented in the dataset	Glyma16g28070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g28070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g165800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g28070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g28070

Limit To All Plant Sequences

>Glyma16g28070.1   sequence type=CDS   gene model=Glyma16g28070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTCAACAATGGCTCTCTCTTCATCATCATTGGCTGGCCAAGCTATCAAGCTTGCCCCCTCCACCCCTGAGCTTGGTGTTGGAAGGGTTAGCATGAGGAAAACAGCCTCCAAAACTGTTTCCTCAGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCAGGTGAGCCCCCATCCTATCTCACTGGTGAATTCCCAGGTGACTATGGTTGGGACACTGCTGGGCTTTCTGCTGACCCAGAGACTTTTGCCAAAAACCGTGAACTGGAAGTCATCCACTCCAGATGGGCCATGTTGGGAGCCTTGGGCTGTGTTTTCCCTGAACTCTTGTCCCGCAACGGAGTCAAGTTTGGCGAGGCCGTGTGGTTCAAGGCCGGGTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAAAGCATTCTTGCCATCTGGGCCACCCAAGTTATCTTGATGGGTGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTGACTGACCCAATCTATCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAGCTCAAGAATGGTAGGTTGGCCATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCAATTGTGACAGGAAAGGGACCCTTGGAAAACCTTGCTGATCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCCACAAACTTTGTTCCCGGAAAGTGA

Predicted protein sequences of Glyma16g28070

Limit To All Plant Sequences

>Glyma16g28070.1   sequence type=predicted peptide   gene model=Glyma16g28070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASTMALSSSSLAGQAIKLAPSTPELGVGRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK*

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