SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65160 | AT | Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein | chr5:26031457-26033668 REVERSE LENGTH=593 | SoyBase | E_val: 2.00E-65 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| PTHR23083 | Panther | O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT | JGI | ISS | |
| PF00515 | PFAM | Tetratricopeptide repeat | JGI | ISS | |
| UniRef100_G7KAB8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Small glutamine-rich tetratricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KAB8_MEDTR | SoyBase | E_val: 9.00E-99 | ISS |
| UniRef100_I1MP57 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MP57_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g28060 not represented in the dataset |
Glyma16g28060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g28060.1 sequence type=CDS gene model=Glyma16g28060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCATGGCTGTGTGGCTTCTCTTCATATAAATATAAACTATGCAACTCTGTCTCTGGGGAACGATTTCAAGAAACTATACAAGCAGGGAAGATTTGAAGAGGCTTTGGCTTTGTATGACCGAGCCATTGCTATTGACTCCAAGAAAGCAACATATCATTGCAACAAGAGTGCGGCTTTGATAAGCTTGGGAAGGTTTCTGCAGGTAATTGTTGAGTGTGAGGAAGCTATCAGGTTGGAGCCTTCTTATGGCAGAGCCCACACCCATTTAGCAACAATTTATTTCAGGTACTCAACAATAATAATTATCATGTGTATGCTTCATTCAATTTGCTATGGACTAGCTCTTCAAAATCACCTTAGCAAATACACTGAAGCTCGGAAAGTCAAAGATTGGAAAGTTATATTAAAGGAATCACAGGCTGCAATATCCTTGGGTGCTGATTCAGCTCCACTGGTTAGTTGGTTTGAGGATGCAGTGACAACATCTCAGCAAGCATCTAAGTTAGATCCAAGTAGCTTTGAGGTGAATGCAGTGGTAAGGAGGGCCAGAGCAGTGGCATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCACGGAAGCATCTGCTGTATACAATGAAGGACTAGAGCATGATCCATACAACTCAGTTCTGCTATGCAATAGAGCAACATGTCATTCTAAGCTAGGTCAATTCAAGAAAGCAATTGAAGATTGTAATGTGGCACTTATAGTTCAGCCAAGTTATAGCAAGGTAAGGTTGAGGAGGACAGATTACAATGTCAAG
>Glyma16g28060.1 sequence type=predicted peptide gene model=Glyma16g28060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPHGCVASLHININYATLSLGNDFKKLYKQGRFEEALALYDRAIAIDSKKATYHCNKSAALISLGRFLQVIVECEEAIRLEPSYGRAHTHLATIYFRYSTIIIIMCMLHSICYGLALQNHLSKYTEARKVKDWKVILKESQAAISLGADSAPLVSWFEDAVTTSQQASKLDPSSFEVNAVVRRARAVASARMSGNLLFKASKFTEASAVYNEGLEHDPYNSVLLCNRATCHSKLGQFKKAIEDCNVALIVQPSYSKVRLRRTDYNVK
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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