SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G34040 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:12374433-12376179 FORWARD LENGTH=457 | SoyBase | E_val: 7.00E-111 | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016846 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbon-sulfur lyase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| PTHR11751 | Panther | SUBGROUP I AMINOTRANSFERASE RELATED | JGI | ISS | |
| PTHR11751:SF162 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF04864 | PFAM | Allinase | JGI | ISS | |
| UniRef100_B9SED1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alliin lyase, putative n=1 Tax=Ricinus communis RepID=B9SED1_RICCO | SoyBase | E_val: 2.00E-131 | ISS |
| UniRef100_I1MP53 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MP53_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma16g28010 not represented in the dataset |
Glyma16g28010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g165300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g28010.1 sequence type=CDS gene model=Glyma16g28010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCATCGTTGGGAATGCAATTAATCACCGAAGGAAAGTACATCGTATTTGGAAGTGGCTCAACTCAACTTCTCAATGCTGCTGTTTATGCCTTGTCTCTCAACTCTTCAATGTCCCCAGCAAAAGTGGTAGCCACAGCACCATATTACTCGCTCTATAGAGGCCAAAAGCAATTGTTTAATTCTAGGGATTTTAGTTATGAAGGAGACACATCCTTGTGGAAAAACAACACAAATAGCAGCTTCAGATTTATTGAGTTTGTGACTTCACCAAACAATCCAGATGGAAACTTGAACAAGGAAGTTCTCAAAGGCTCTGATGTGAAAACCATTTATGATCGAGCCTATTATTGGCCACATTTCACTGCTATTCCTTCACCAGCTGATGATGATCTTATGGTGTTTACAATTTCTAAGCTCACAGGCCATGCTGGGAGTAGATTTGGATTGGCAATAATAAAGGATGAGGCAGTATATCAAAAGATGATGATATATTTGAGATTGAGCACCATTGGAGTTTCCCGTGACGTTCAGCTGAGAGTTTTAAAGCTTTTGGACATGGCTACTGAAGGAGATGGAAAAGAAATATTCCAATTTACATATTCAACAATGAATGATCATTGGATAAGGTTGAAACAAATCATATATAAATCGAAACGGTTTTCTCTACAGAAATTGTCTCCCCAGTACTGTACCTTTTTCAAGAGCGTCAGAGATCCTTCACCAGCTTACGCTAGGTTAAAGTGTGAGAGACAACAAGACATGAATTGCTATGAAACCCTAAAAGCTGCTCGCACGATTGGCCGTGAAGGAAGTATCTTTAGTGCAGATGAACGTTACGTGCGTCTCAGTATTATTAAGAGCAAAGATGATTTTGAGATACTAACAAATAAGCTCAGAAGTCTTGTTGCAAAGGAATGGGAATCCAACCCAGCTTCCATTTAA
>Glyma16g28010.1 sequence type=predicted peptide gene model=Glyma16g28010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSLGMQLITEGKYIVFGSGSTQLLNAAVYALSLNSSMSPAKVVATAPYYSLYRGQKQLFNSRDFSYEGDTSLWKNNTNSSFRFIEFVTSPNNPDGNLNKEVLKGSDVKTIYDRAYYWPHFTAIPSPADDDLMVFTISKLTGHAGSRFGLAIIKDEAVYQKMMIYLRLSTIGVSRDVQLRVLKLLDMATEGDGKEIFQFTYSTMNDHWIRLKQIIYKSKRFSLQKLSPQYCTFFKSVRDPSPAYARLKCERQQDMNCYETLKAARTIGREGSIFSADERYVRLSIIKSKDDFEILTNKLRSLVAKEWESNPASI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
