Glyma16g27960 - SoyBase

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Report for Sequence Feature Glyma16g27960

Feature Type:	gene_model
Chromosome:	Gm16
Start:	31922243
stop:	31929368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g27960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76730	AT	Annotation by Michelle Graham. TAIR10: NagB/RpiA/CoA transferase-like superfamily protein \| chr1:28803033-28804703 REVERSE LENGTH=354	SoyBase	E_val: 4.00E-176	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009396	GO-bp	Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
PTHR13017	Panther	5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED	JGI		ISS
PF01812	PFAM	5-formyltetrahydrofolate cyclo-ligase family	JGI		ISS
UniRef100_B9SE88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SE88_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1MP49	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MP49_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g27960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g27960 not represented in the dataset	Glyma16g27960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g27960

Paralog	Evidence	Comments
Glyma02g08860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g27960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g164900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g27960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g27960

Limit To All Plant Sequences

>Glyma16g27960.3   sequence type=transcript   gene model=Glyma16g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATTATCCAATAAAATACCATTAGCTATTTTTTTTTATCCATTTCTTCTTCTTCTTCTCCTTCTTCTAACATTGGAATCATATATTTTTTTATAACCACATAATTAGGACCTTTGCTCTTCCATGGGATCATATATCCTTTAAATTTTGATGTTTTGGATCCAGTGGGAGACTAATTTTACATTGGAATCTTCCTTAAGGTATGTTGCTGACTGTTCTCAAGCTGTAGTTGTACACATGTAACTCTGTCAACATTTTCAGACCAAATCCAACGTTGTTTCTGGCAAAAATGGATGCATTCCGTTTATCACATTCATTTATGCTCAGCACCAACATCCACAGCCCCTCCTCTCTCTGCACCCTTCGTTCCCTCTCCACCAATCCCCGCAACAGGTGGTTCAAGGTGGAAGCCACCGCCGGCGGCAGCCAGAAGAAGAACAATAACAAGGCCTTCGACGCGGCGGCGTTCGAGGCGGAGCGACTTGCCCTCGACGCAGAGGCCCGGCGAACCATGGCGGACGCCGCCGACCCGAAGGCCTGGAAATGGATAATCCGGAAGAGAATATGGGATATGATGGAAGCTCGCAACTTTGCCAACAACCCTCGGCCGGTTCACCACCGCATTCCCAATTTCGTTGGCGCCTCTGTTGCTGCTGAAAAGATGAGGGAGCTAGATGTGTTTCAGGATGCACAATGTGTAAAGGTTAATCCAGACTCTCCTCAGAAACAAGTCAGGTTTCTCACTCTTTCAGATGGCAAGAAGTTGTTGACTCCTCAACCTCGGCTGAGAACAGGTTTCTTCTCTGTACTTGATTCCAATATGTTAACTTTGGATACCATCAAGGAAGCCTGCACTTCTGTTGGGGTTGCCAAGCATGGACGGCCGATTGGGTTAGACGAAAAGATAAAGGTGGATCTTATTGTTATTGGATCTGTTGCTGTTGATCCAAAGACAGGTGCTCGATTGGGAAAGGGAGAGGGATTTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGTGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGGAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAGTTCGTATACTGAGGGAGCTCAAGAAGAGGATTGAACAAGAGACTGGACAGAAGCTTCCTACTGGTCCATCGGAGAAATTACCCCCTACTGCTCAACGAAGTAGAAGGGGTTGATTATGTACATAGAATGATGGGTCATGAGTGGAAGGATATTGCTTTTGTTCAGAAGTCAAACGTGTAGAGTTATATACAATAAATTACAGATTTCCTTGGTCCCCATGAAAGTAAGATCTTTTTCTTACAACTGAAGTCATGGGATGAGTTCTAAAGTTATGAAGCTTCGATTATGATAGGAAAGAAGTTCCACGAAATGGTTCATTTGTCCACTCCAAACCGACTGTGGAATATCATTGGGTGTCTTTTACTACGACTTGGATTTCTTTTAAGATCTTATCGCATAAGTCAAATGTGATGTGGATACAAACACGTGAATCAATTAAAAAATTTCATGTTGTGAGTTCTAGAGATGGAATGTTATTCAAGTCTTTTTCAAATATCATTGCCCACTGTGTTTAAGTTGTACAATGAAAATGTATATTGGTTTCGTTTGTGATGGCAACACAATCAGGCTTTTGAAGGATAAGTATGGAATAAAGTAGAAAGACTCACTACTTAAACGTATAGTATTCAAAATCTATCTTGAGATATCCAAGGAACTTGCCATTTGAGGCATATAAGAATTGAGTACTGGACTGCTTCACAAATTATAAATGTTACCTAATAGGTTTAGTTTTTACCCCTTCATTTTACTTCTACAGACATCAATGTTATAAATATTGTATTAGTTGCATGGAGCAAGCTCTTAGTTTGTGCATGGGATCAGATAGTGGATTTAGTAGGTTTGACAAAATCTACTTGGTGAAATCCAACTTTGAAA

>Glyma16g27960.4   sequence type=transcript   gene model=Glyma16g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATTATCCAATAAAATACCATTAGCTATTTTTTTTTATCCATTTCTTCTTCTTCTTCTCCTTCTTCTAACATTGGAATCATATATTTTTTTATAACCACATAATTAGGACCTTTGCTCTTCCATGGGATCATATATCCTTTAAATTTTGATGTTTTGGATCCAGTGGGAGACTAATTTTACATTGGAATCTTCCTTAAGGTATGTTGCTGACTGTTCTCAAGCTGTAGTTGTACACATGTAACTCTGTCAACATTTTCAGACCAAATCCAACGTTGTTTCTGGCAAAAATGGATGCATTCCGTTTATCACATTCATTTATGCTCAGCACCAACATCCACAGCCCCTCCTCTCTCTGCACCCTTCGTTCCCTCTCCACCAATCCCCGCAACAGGTGGTTCAAGGTGGAAGCCACCGCCGGCGGCAGCCAGAAGAAGAACAATAACAAGGCCTTCGACGCGGCGGCGTTCGAGGCGGAGCGACTTGCCCTCGACGCAGAGGCCCGGCGAACCATGGCGGACGCCGCCGACCCGAAGGCCTGGAAATGGATAATCCGGAAGAGAATATGGGATATGATGGAAGCTCGCAACTTTGCCAACAACCCTCGGCCGGTTCACCACCGCATTCCCAATTTCGTTGGCGCCTCTGTTGCTGCTGAAAAGATGAGGGAGCTAGATGTGTTTCAGGATGCACAATGTGTAAAGGTTAATCCAGACTCTCCTCAGAAACAAGTCAGGTTTCTCACTCTTTCAGATGGCAAGAAGTTGTTGACTCCTCAACCTCGGCTGAGAACAGGTTTCTTCTCTGTACTTGATTCCAATATGTTAACTTTGGATACCATCAAGGAAGCCTGCACTTCTGTTGGGGTTGCCAAGCATGGACGGCCGATTGGGTTAGACGAAAAGATAAAGGTGGATCTTATTGTTATTGGATCTGTTGCTGTTGATCCAAAGACAGGTGCTCGATTGGGAAAGGGAGAGGGATTTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGTGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGGAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAGTTCGTATACTGAGGGAGCTCAAGAAGAGGATTGAACAAGAGACTGGACAGAAGCTTCCTACTGGTCCATCGGAGAAATTACCCCCTACTGCTCAACGAAGTAGAAGGGGTTGATTATGTACATAATGATGGGTCATGAGTGGAAGGATATTGCTTTTGTTCAGAAGTCAAACGTGTAGAGTTATATACAATAAATTACAGATTTCCTTGGTCCCCATGAAAGTAAGATCTTTTTCTTACAACTGAAGTCATGGGATGAGTTCTAAAGTTATGAAGCTTCGATTATGATAGGAAAGAAGTTCCACGAAATGGTTCATTTGTCCACTCCAAACCGACTGTGGAATATCATTGGGTGTCTTTTACTACGACTTGGATTTCTTTTAAGATCTTATCGCATAAGTCAAATGTGATGTGGATACAAACACGTGAATCAATTAAAAAATTTCATGTTGTGAGTTCTAGAGATGGAATGTTATTCAAGTCTTTTTCAAATATCATTGCCCACTGTGTTTAAGTTGTACAATGAAAATGTATATTGGTTTCGTTTGTGATGGCAACACAATCAGGCTTTTGAAGGATAAGTATGGAATAAAGTAGAAAGACTCACTACTTAAACGTATAGTATTCAAAATCTATCTTGAGATATCCAAGGAACTTGCCATTTGAGGCATATAAGAATTGAGTACTGGACTGCTTCACAAATTATAAATGTTACCTAATAGGTTTAGTTTTTACCCCTTCATTTTACTTCTACAGACATCAATGTTATAAATATTGTATTAGTTGCATGGAGCAAGCTCTTAGTTTGTGCATGGGATCAGATAGTGGATTTAGTAGGTTTGACAAAATCTACTTGGTGAAATCCAACTTTGAAA

Coding sequences of Glyma16g27960

Limit To All Plant Sequences

>Glyma16g27960.2   sequence type=CDS   gene model=Glyma16g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCATTCCGTTTATCACATTCATTTATGCTCAGCACCAACATCCACAGCCCCTCCTCTCTCTGCACCCTTCGTTCCCTCTCCACCAATCCCCGCAACAGGTGGTTCAAGGTGGAAGCCACCGCCGGCGGCAGCCAGAAGAAGAACAATAACAAGGCCTTCGACGCGGCGGCGTTCGAGGCGGAGCGACTTGCCCTCGACGCAGAGGCCCGGCGAACCATGGCGGACGCCGCCGACCCGAAGGCCTGGAAATGGATAATCCGGAAGAGAATATGGGATATGATGGAAGCTCGCAACTTTGCCAACAACCCTCGGCCGGTTCACCACCGCATTCCCAATTTCGTTGGCGCCTCTGTTGCTGCTGAAAAGATGAGGGAGCTAGATGTGTTTCAGGATGCACAATGTGTAAAGGTTAATCCAGACTCTCCTCAGAAACAAGTCAGGTTTCTCACTCTTTCAGATGGCAAGAAGTTGTTGACTCCTCAACCTCGGCTGAGAACAGGTTTCTTCTCTGTACTTGATTCCAATATGTTAACTTTGGATACCATCAAGGAAGCCTGCACTTCTGTTGGGGTTGCCAAGCATGGACGGCCGATTGGGTTAGACGAAAAGATAAAGGTGGATCTTATTGTTATTGGATCTGTTGCTGTTGATCCAAAGACAGGTGCTCGATTGGGAAAGGGAGAGGGATTTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGTGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGGAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAGTTCGTATACTGAGGGAGCTCAAGAAGAGGATTGAACAAGAGACTGGACAGAAGCTTCCTACTGGTCCATCGGAGAAATTACCCCCTACTGCTCAACGAAGTAGAAGGGGTTGA

>Glyma16g27960.3   sequence type=CDS   gene model=Glyma16g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCATTCCGTTTATCACATTCATTTATGCTCAGCACCAACATCCACAGCCCCTCCTCTCTCTGCACCCTTCGTTCCCTCTCCACCAATCCCCGCAACAGGTGGTTCAAGGTGGAAGCCACCGCCGGCGGCAGCCAGAAGAAGAACAATAACAAGGCCTTCGACGCGGCGGCGTTCGAGGCGGAGCGACTTGCCCTCGACGCAGAGGCCCGGCGAACCATGGCGGACGCCGCCGACCCGAAGGCCTGGAAATGGATAATCCGGAAGAGAATATGGGATATGATGGAAGCTCGCAACTTTGCCAACAACCCTCGGCCGGTTCACCACCGCATTCCCAATTTCGTTGGCGCCTCTGTTGCTGCTGAAAAGATGAGGGAGCTAGATGTGTTTCAGGATGCACAATGTGTAAAGGTTAATCCAGACTCTCCTCAGAAACAAGTCAGGTTTCTCACTCTTTCAGATGGCAAGAAGTTGTTGACTCCTCAACCTCGGCTGAGAACAGGTTTCTTCTCTGTACTTGATTCCAATATGTTAACTTTGGATACCATCAAGGAAGCCTGCACTTCTGTTGGGGTTGCCAAGCATGGACGGCCGATTGGGTTAGACGAAAAGATAAAGGTGGATCTTATTGTTATTGGATCTGTTGCTGTTGATCCAAAGACAGGTGCTCGATTGGGAAAGGGAGAGGGATTTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGTGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGGAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAGTTCGTATACTGAGGGAGCTCAAGAAGAGGATTGAACAAGAGACTGGACAGAAGCTTCCTACTGGTCCATCGGAGAAATTACCCCCTACTGCTCAACGAAGTAGAAGGGGTTGA

>Glyma16g27960.4   sequence type=CDS   gene model=Glyma16g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCATTCCGTTTATCACATTCATTTATGCTCAGCACCAACATCCACAGCCCCTCCTCTCTCTGCACCCTTCGTTCCCTCTCCACCAATCCCCGCAACAGGTGGTTCAAGGTGGAAGCCACCGCCGGCGGCAGCCAGAAGAAGAACAATAACAAGGCCTTCGACGCGGCGGCGTTCGAGGCGGAGCGACTTGCCCTCGACGCAGAGGCCCGGCGAACCATGGCGGACGCCGCCGACCCGAAGGCCTGGAAATGGATAATCCGGAAGAGAATATGGGATATGATGGAAGCTCGCAACTTTGCCAACAACCCTCGGCCGGTTCACCACCGCATTCCCAATTTCGTTGGCGCCTCTGTTGCTGCTGAAAAGATGAGGGAGCTAGATGTGTTTCAGGATGCACAATGTGTAAAGGTTAATCCAGACTCTCCTCAGAAACAAGTCAGGTTTCTCACTCTTTCAGATGGCAAGAAGTTGTTGACTCCTCAACCTCGGCTGAGAACAGGTTTCTTCTCTGTACTTGATTCCAATATGTTAACTTTGGATACCATCAAGGAAGCCTGCACTTCTGTTGGGGTTGCCAAGCATGGACGGCCGATTGGGTTAGACGAAAAGATAAAGGTGGATCTTATTGTTATTGGATCTGTTGCTGTTGATCCAAAGACAGGTGCTCGATTGGGAAAGGGAGAGGGATTTGCAGAACTTGAATATGGTATGCTGAGGTACATGGGAGCCATCGATGATTCAACACGAGTTGTTACATCTGTGCATGACTGCCAATTGGTGGATGATATTCCAGTTGAAAAGCTGTTAATCCATGATGTACCAGTGGATATCATTTGTACCCCGACACAGGTCATTTTTACAAATACATCTATCCCAAAGCCTCAAGGAATTTATTGGGACAAGTTGTCTCCTGAGAAGTTGGGACAAGTTCGTATACTGAGGGAGCTCAAGAAGAGGATTGAACAAGAGACTGGACAGAAGCTTCCTACTGGTCCATCGGAGAAATTACCCCCTACTGCTCAACGAAGTAGAAGGGGTTGA

Predicted protein sequences of Glyma16g27960

Limit To All Plant Sequences

>Glyma16g27960.2   sequence type=predicted peptide   gene model=Glyma16g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAFRLSHSFMLSTNIHSPSSLCTLRSLSTNPRNRWFKVEATAGGSQKKNNNKAFDAAAFEAERLALDAEARRTMADAADPKAWKWIIRKRIWDMMEARNFANNPRPVHHRIPNFVGASVAAEKMRELDVFQDAQCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSVLDSNMLTLDTIKEACTSVGVAKHGRPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFAELEYGMLRYMGAIDDSTRVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTSIPKPQGIYWDKLSPEKLGQVRILRELKKRIEQETGQKLPTGPSEKLPPTAQRSRRG*

>Glyma16g27960.3   sequence type=predicted peptide   gene model=Glyma16g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAFRLSHSFMLSTNIHSPSSLCTLRSLSTNPRNRWFKVEATAGGSQKKNNNKAFDAAAFEAERLALDAEARRTMADAADPKAWKWIIRKRIWDMMEARNFANNPRPVHHRIPNFVGASVAAEKMRELDVFQDAQCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSVLDSNMLTLDTIKEACTSVGVAKHGRPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFAELEYGMLRYMGAIDDSTRVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTSIPKPQGIYWDKLSPEKLGQVRILRELKKRIEQETGQKLPTGPSEKLPPTAQRSRRG*

>Glyma16g27960.4   sequence type=predicted peptide   gene model=Glyma16g27960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAFRLSHSFMLSTNIHSPSSLCTLRSLSTNPRNRWFKVEATAGGSQKKNNNKAFDAAAFEAERLALDAEARRTMADAADPKAWKWIIRKRIWDMMEARNFANNPRPVHHRIPNFVGASVAAEKMRELDVFQDAQCVKVNPDSPQKQVRFLTLSDGKKLLTPQPRLRTGFFSVLDSNMLTLDTIKEACTSVGVAKHGRPIGLDEKIKVDLIVIGSVAVDPKTGARLGKGEGFAELEYGMLRYMGAIDDSTRVVTSVHDCQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTSIPKPQGIYWDKLSPEKLGQVRILRELKKRIEQETGQKLPTGPSEKLPPTAQRSRRG*

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