Glyma16g27940 - SoyBase

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Report for Sequence Feature Glyma16g27940

Feature Type:	gene_model
Chromosome:	Gm16
Start:	31880308
stop:	31886290
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g27940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59280	AT	Annotation by Michelle Graham. TAIR10: Protein Transporter, Pam16 \| chr3:21909266-21910519 REVERSE LENGTH=116	SoyBase	E_val: 6.00E-59	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
KOG3442	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12388	Panther	MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE	JGI		ISS
PF03656	PFAM	Pam16	JGI		ISS
UniRef100_I1MP46	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MP46_SOYBN	SoyBase	E_val: 9.00E-79	ISS
UniRef100_Q93VV9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT3g59280/F25L23_140 n=1 Tax=Arabidopsis thaliana RepID=Q93VV9_ARATH	SoyBase	E_val: 3.00E-56	ISS

Expression Patterns of Glyma16g27940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g27940

Paralog	Evidence	Comments
Glyma02g08820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g27940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g164700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g27940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g27940

Limit To All Plant Sequences

>Glyma16g27940.2   sequence type=transcript   gene model=Glyma16g27940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTAGATTCTGTGCGTAAAGGGAATTAAAAATTCTTTCTTTTGATTTTTCTCTATTGTCTCGTAAGATTTAGAGGCTGCTAAGATTCTCGCAAACTTGATTGTGATGGGTGGAGGAATCTTGGCAAGAGCAGTTGTTCAGGCATATCGTCAAGCGCTTACTAATGCCTCAAAAAATGGTGTTGCACAAGAGACAATTCAAAATACTATCCGCAGAGCTAGCAAGGTGATGACGGAGCAAGAGGCTCGACGGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAGAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTCCAGTCCAAAGTTCATCGGGCCAAGGAATGTCTAGAGGCAGTTCAACAAGGCAAGAGTCAGGGTACCCCTAGTTGAGAACTTAGATTTTCTCCATTTTATAACCATTGTGTAATCATTTTTGCCTCCAAGTTTGTGTTGTACTATTTGCGTAATCAAAAGTTTCTGAAGTAAAAATTTTATTATCAAAATTGTAAATGATTAGTTTGTGATTGACTGCTAATAAAGGCTACTATAAAATGAAATTACATGCATGTTTTTAACATGCTTAAAATTAGAATGTGGTAGGAAATAATAGTAATGTCGTAAAAAAACACGTTTCATTACTTGATCGATGCTAGAATTTTGATATCTTTCACTTTCTGTTTATCATTGCTCATATTTATACTCCAGAAGTTTTCACCTTTGT

Coding sequences of Glyma16g27940

Limit To All Plant Sequences

>Glyma16g27940.1   sequence type=CDS   gene model=Glyma16g27940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTAAGATTCTCGCAAACTTGATTGTGATGGGTGGAGGAATCTTGGCAAGAGCAGTTGTTCAGGCATATCGTCAAGCGCTTACTAATGCCTCAAAAAATGGTGTTGCACAAGAGACAATTCAAAATACTATCCGCAGAGCTAGCAAGGTGATGACGGAGCAAGAGGCTCGACGGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAGAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTCCAGTCCAAAGTTCATCGGGCCAAGGAATGTCTAGAGGCAGTTCAACAAGGCAAGAGTCAGGGTACCCCTAGTTGA

>Glyma16g27940.2   sequence type=CDS   gene model=Glyma16g27940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGAGGAATCTTGGCAAGAGCAGTTGTTCAGGCATATCGTCAAGCGCTTACTAATGCCTCAAAAAATGGTGTTGCACAAGAGACAATTCAAAATACTATCCGCAGAGCTAGCAAGGTGATGACGGAGCAAGAGGCTCGACGGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAGAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTCCAGTCCAAAGTTCATCGGGCCAAGGAATGTCTAGAGGCAGTTCAACAAGGCAAGAGTCAGGGTACCCCTAGTTGA

Predicted protein sequences of Glyma16g27940

Limit To All Plant Sequences

>Glyma16g27940.1   sequence type=predicted peptide   gene model=Glyma16g27940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTIRRASKVMTEQEARRILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGTPS*

>Glyma16g27940.2   sequence type=predicted peptide   gene model=Glyma16g27940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGGILARAVVQAYRQALTNASKNGVAQETIQNTIRRASKVMTEQEARRILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGTPS*

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