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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24630 | AT | Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein | chr4:12714919-12717111 FORWARD LENGTH=407 | SoyBase | E_val: 0 | ISS |
| GO:0007275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organismal development | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1311 | KOG | DHHC-type Zn-finger proteins | JGI | ISS | |
| PTHR22883 | Panther | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PF01529 | PFAM | DHHC zinc finger domain | JGI | ISS | |
| UniRef100_B9SE95 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SE95_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MP44 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MP44_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g27910 not represented in the dataset |
Glyma16g27910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g08790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g164500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g27910.2 sequence type=transcript gene model=Glyma16g27910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACCATGGAGGAGTTTATGTCTTGTTTTGGTGAAATTTCTTCTCTTTGATTAAAAGTGAAGTTAAACTGGAAAAAAATGAGATTTAATTAATGAACGAGTGACAAATGGTATGGGTTTGGTTTTTGGTTTGTTTATATTGGTTTAACATGGGATGTTGCGATGATATAGAGGGGTCCATGCTATGTTCTGTATGATACCAATAAGCTTGTGGTAGAGTAAACTCCAAAAGGATGAAGAAAAAAGTTAGCATAAGGCATAGAGTGCATTATTATGTTAAAGAATGAGAAATTGCAATGGCTTAGAGTGCATTATTATTAACTATATGCTGGAATATATATGATAAGGCTCCATTGGTTTATGAGAAACTACGGGTGGAGATTTTCCCCCCTATTAAATAGTAACAAATTTGGAAGATTAAATACACAAATGTTCACTTCTCTTGTGTATGTTGGTCTCTCAGTGCTTGCATATGGTAGTAATCTGCATTATCTGCAGGCTCGATGATGGCTAGTGATGTCTGGTGGTGGCTTTTCGTTGGATAGTTAAGGCTGCACAAATGACTTCCAATACAATCATTTGTTGTGTTATGGATTTTTTCAAAATTCCTATTTGGAGGAAGGTTGATATTTGGACCGGATGCTAGGTCACTGCTTGTCACCTTGTTGCTGATCATTGTTCCAGTTATTGTCTTTTGTGTATTTGTAGCAAGGCATCTTCGGCATGAATTTTCTTCATATAATGCAGGATATGCTATTTTGGTGGTGGCAGTTCTCTTTAATATTTATGTGTTGATTCTTCTCTTTCTTACTTCCTCTCGTGATCCGGGCGTTATCCCAAGGAATTTACATCCACCAGAGGAAGAGTTCCGTTATGACTCTTCAGTTTCTGTTGAAATTGGGGGACGCCAAACTCCGAGCCTTCAGTTCCCTCGAACAAAAGAAGTAATGGTAAATGGCCATTCTGTGAAGGTGAAATATTGTGACACTTGTATGCTCTATCGTCCTCCTCGTTGTTCACATTGCTCCATTTGCAACAATTGTGTTGAACGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGTATTGGGCTGAGGAACTACCGTTACTTCTTTCTGTTTGTTTCTTCGGCAACTATTCTATGTATCTATGTGTTTTCCATCTCAGCTTTTTACATCAAGGTTCTGATGGATCATTATAAGGGGACAGTTTGGAAGGCAATGAAAGAATCCCCTGCATCTGTTATATTAATGGCATATTGTTTCATCTCTTTGTGGTTTGTCGGTGGACTAACTGGCTTTCATTTGTACCTTATTGGCACAAATCAGACTACCTATGAGAACTTCCGCTACAGAGCCGATAACAGGATCAATGTTTACAATCTGGGTTGTTTTAACAATTTCCTAGAAGTATTTTGTACAAAAGTGAAGCCCTCAAGGAACAATTTCCGAGCTTTTGTTCAAGAGGAGGTACCGAGGCCACCCCCTCCGGTCATTTCCCGGGAACCCGAACCAGATCTGGGTGGTGGAGATCCACGTTCTAAAGTTGAAGACGATCTAGATATCGGTGAAGACCTGTTAAAGATATCACAGCGTCGGAATATTGAAGAAATTGACGAGGACATCCGGAGCAGAGGAAGCAATGGACCTCCCCATAATACTTCTGAAGTAGATTCAGTTTTGGGTTCAGATCGCCGGGCCCCAACAATTCGATCTGAAGCAAGGCACTCAAGTGAGGGAAGAAGTGAAAGCTGGGAAATCGGGTCTGAGGTCCTTGCCAATTCAACTGTAACTGAAAGCAGAAGCTATGTTGTATCAAAGGAGGTGCGCCAAAAACTTGGGGGTTCTTTCTGAGATGTGGGGTTTCTTAGATATTAAAAATGGAAAAGGAAATGGTGTTTGATCAGATTATAGGAATGGGAATTGAATTGATTGAGGCATTAAGTACAAAACTTATTTGATCTTTTTTTGTGGTAAGGTTAGCTCTTTTGGAAAGAATAGAAATGTGTGTAATTTTCGAGATAAAGCAATAGTGTCTTTTTTTTCTCCTGTCAATTTTTTTTCCTACAATATGTGCATTGCATCTTTATGTGGCTTTATTCTTTGTGTAAATAACCAGTTGTGATGCTAAAACATTTATCTGCGTACTGTGATTTAGGCATTGTAAAAAACTGGTTCCTCCGCTCAATGCATTTATCCATGCTACTCTGATACAATGGTGCTGTGATTTTGGTGACTCCATAAGGTTTGAAGAAG
>Glyma16g27910.1 sequence type=CDS gene model=Glyma16g27910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACCGAAGCGCGTTTATGAAGCATGGAAAGGAAGTAATAAATTCCTATTTGGAGGAAGGTTGATATTTGGACCGGATGCTAGGTCACTGCTTGTCACCTTGTTGCTGATCATTGTTCCAGTTATTGTCTTTTGTGTATTTGTAGCAAGGCATCTTCGGCATGAATTTTCTTCATATAATGCAGGATATGCTATTTTGGTGGTGGCAGTTCTCTTTAATATTTATGTGTTGATTCTTCTCTTTCTTACTTCCTCTCGTGATCCGGGCGTTATCCCAAGGAATTTACATCCACCAGAGGAAGAGTTCCGTTATGACTCTTCAGTTTCTGTTGAAATTGGGGGACGCCAAACTCCGAGCCTTCAGTTCCCTCGAACAAAAGAAGTAATGGTAAATGGCCATTCTGTGAAGGTGAAATATTGTGACACTTGTATGCTCTATCGTCCTCCTCGTTGTTCACATTGCTCCATTTGCAACAATTGTGTTGAACGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGTATTGGGCTGAGGAACTACCGTTACTTCTTTCTGTTTGTTTCTTCGGCAACTATTCTATGTATCTATGTGTTTTCCATCTCAGCTTTTTACATCAAGGTTCTGATGGATCATTATAAGGGGACAGTTTGGAAGGCAATGAAAGAATCCCCTGCATCTGTTATATTAATGGCATATTGTTTCATCTCTTTGTGGTTTGTCGGTGGACTAACTGGCTTTCATTTGTACCTTATTGGCACAAATCAGACTACCTATGAGAACTTCCGCTACAGAGCCGATAACAGGATCAATGTTTACAATCTGGGTTGTTTTAACAATTTCCTAGAAGTATTTTGTACAAAAGTGAAGCCCTCAAGGAACAATTTCCGAGCTTTTGTTCAAGAGGAGGTACCGAGGCCACCCCCTCCGGTCATTTCCCGGGAACCCGAACCAGATCTGGGTGGTGGAGATCCACGTTCTAAAGTTGAAGACGATCTAGATATCGGTGAAGACCTGTTAAAGATATCACAGCGTCGGAATATTGAAGAAATTGACGAGGACATCCGGAGCAGAGGAAGCAATGGACCTCCCCATAATACTTCTGAAGTAGATTCAGTTTTGGGTTCAGATCGCCGGGCCCCAACAATTCGATCTGAAGCAAGGCACTCAAGTGAGGGAAGAAGTGAAAGCTGGGAAATCGGGTCTGAGGTCCTTGCCAATTCAACTGTAACTGAAAGCAGAAGCTATGTTGTATCAAAGGAGGTGCGCCAAAAACTTGGGGGTTCTTTCTGA >Glyma16g27910.2 sequence type=CDS gene model=Glyma16g27910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAAATGGCCATTCTGTGAAGGTGAAATATTGTGACACTTGTATGCTCTATCGTCCTCCTCGTTGTTCACATTGCTCCATTTGCAACAATTGTGTTGAACGTTTTGATCACCATTGCCCTTGGGTGGGCCAATGTATTGGGCTGAGGAACTACCGTTACTTCTTTCTGTTTGTTTCTTCGGCAACTATTCTATGTATCTATGTGTTTTCCATCTCAGCTTTTTACATCAAGGTTCTGATGGATCATTATAAGGGGACAGTTTGGAAGGCAATGAAAGAATCCCCTGCATCTGTTATATTAATGGCATATTGTTTCATCTCTTTGTGGTTTGTCGGTGGACTAACTGGCTTTCATTTGTACCTTATTGGCACAAATCAGACTACCTATGAGAACTTCCGCTACAGAGCCGATAACAGGATCAATGTTTACAATCTGGGTTGTTTTAACAATTTCCTAGAAGTATTTTGTACAAAAGTGAAGCCCTCAAGGAACAATTTCCGAGCTTTTGTTCAAGAGGAGGTACCGAGGCCACCCCCTCCGGTCATTTCCCGGGAACCCGAACCAGATCTGGGTGGTGGAGATCCACGTTCTAAAGTTGAAGACGATCTAGATATCGGTGAAGACCTGTTAAAGATATCACAGCGTCGGAATATTGAAGAAATTGACGAGGACATCCGGAGCAGAGGAAGCAATGGACCTCCCCATAATACTTCTGAAGTAGATTCAGTTTTGGGTTCAGATCGCCGGGCCCCAACAATTCGATCTGAAGCAAGGCACTCAAGTGAGGGAAGAAGTGAAAGCTGGGAAATCGGGTCTGAGGTCCTTGCCAATTCAACTGTAACTGAAAGCAGAAGCTATGTTGTATCAAAGGAGGTGCGCCAAAAACTTGGGGGTTCTTTCTGA
>Glyma16g27910.1 sequence type=predicted peptide gene model=Glyma16g27910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPKRVYEAWKGSNKFLFGGRLIFGPDARSLLVTLLLIIVPVIVFCVFVARHLRHEFSSYNAGYAILVVAVLFNIYVLILLFLTSSRDPGVIPRNLHPPEEEFRYDSSVSVEIGGRQTPSLQFPRTKEVMVNGHSVKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFLFVSSATILCIYVFSISAFYIKVLMDHYKGTVWKAMKESPASVILMAYCFISLWFVGGLTGFHLYLIGTNQTTYENFRYRADNRINVYNLGCFNNFLEVFCTKVKPSRNNFRAFVQEEVPRPPPPVISREPEPDLGGGDPRSKVEDDLDIGEDLLKISQRRNIEEIDEDIRSRGSNGPPHNTSEVDSVLGSDRRAPTIRSEARHSSEGRSESWEIGSEVLANSTVTESRSYVVSKEVRQKLGGSF* >Glyma16g27910.2 sequence type=predicted peptide gene model=Glyma16g27910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNGHSVKVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFLFVSSATILCIYVFSISAFYIKVLMDHYKGTVWKAMKESPASVILMAYCFISLWFVGGLTGFHLYLIGTNQTTYENFRYRADNRINVYNLGCFNNFLEVFCTKVKPSRNNFRAFVQEEVPRPPPPVISREPEPDLGGGDPRSKVEDDLDIGEDLLKISQRRNIEEIDEDIRSRGSNGPPHNTSEVDSVLGSDRRAPTIRSEARHSSEGRSESWEIGSEVLANSTVTESRSYVVSKEVRQKLGGSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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