SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma16g27900

Feature Type:gene_model
Chromosome:Gm16
Start:31839894
stop:31842972
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g27900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G71695AT Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein | chr1:26964359-26966557 FORWARD LENGTH=358 SoyBaseE_val: 6.00E-101ISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0048653GO-bp Annotation by Michelle Graham. GO Biological Process: anther development SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004601GO-mf Annotation by Michelle Graham. GO Molecular Function: peroxidase activity SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
PF00141PFAM Peroxidase JGI ISS
UniRef100_C6TCA1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCA1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q96520UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase 12 n=2 Tax=Arabidopsis thaliana RepID=PER12_ARATH SoyBaseE_val: 3.00E-98ISS

Expression Patterns of Glyma16g27900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g27900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g164400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g27900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma16g27900
>Glyma16g27900.3   sequence type=transcript   gene model=Glyma16g27900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACGTTTTAAATATTATACGTAGAAGACTAGTGGGTGGGAAGTGGGAAGCAACCGAAGAACGTTACCTCAATATTGAATCTATAAATAACTCTTCTAAGTTTTGGTTATCTCAAGTCACACTCATAGCAAATTAATCAAACATGGCTAGGGTTAGTCCTTTGTTTCACTCTTTGCTCTTGATTTCTTCCCTTGTATTGGCTTCTCAAATCCATGTTTCCTCTGGGAAACTAGTCCCTGGACTATCATGGAATTACTATTTGTTGACATGTCCCAAGCTTGAGAGGATTATAAGGAAGCATCTTGAGGATGTCTTCGAGAAGGACAGTGGAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATTTAGGAGGCCCTGATTTTGACGTGCCACTGGGAAGAAAAGACGGCCTAGGACCAAACGCCACCGCGCCGGACAACCTACCGGCACCATTCTTCCGAACCGACGATCTTCTGAGAGGATTCGGAAATAGAGGTTTCGATGCCACCGATGTGGTCGCTCTCTCCGGCGCACACACCTACGGTCGTGCCCACTGTCCCTCCCTAGTGAACAGAACCATCGAAACGGACCCACCAATCGACCCAAACTTCAACAACAATTTGATAGCTACGTGTCCCAATGCCGAGTCCCCCAACACCGTTAATTTGGACGTGAGAACCCCCGTGAAGTTCGACAACATGTATTACATCAACCTCTTGAACCGCCAAGGAGTGTTCACTTCTGACCAGGACATCGCGGGCAGCCCCAAAACCAAGGAAATCGTGAACCAGTTCGCTTCAGACCAGAAACTGTTTTTTAAGAAATTTTCCGATGCTTTTGTGAAGGTGAGCCAGCTAGATGTGATAACGGATCGTATTGGGAAAGGGGAGATTCGTGATAAGTGCTTTGTTGCAAATAAGAGAAGATCTTCTATGGCGTCTGTGGTGGAAGAAGTAGTGGAATTGGCTCAGGAGATATAATTGTATTGGGTCCTTTTGCTCAGGGTGTTCTTTTTTGTTTTTCTGAATGGATTGTGTAATAAACGTTGATATGTGTTTTCTTTTCTTGTTGTCTTCTCATAGATCATTGCTTTGGATTGGTTCAAAGTTTAACCAGTATAACATAAACAAGGCAAAAGTAGTACGAGAATAATTTATATAAATATTGCTGCTGTGTTCCATCGAGAGCTTATTCCCTGTTATTATGGACAGTGGTGATAAAATTAGATTTAGTGACAAAAGTTGGTCACCATTTGCGAGATATAGCAACATAAAAATAGTTTTACTTAAAAAAATGCAAAATCTAATATATTTGCTTGAATTTTTGTGTATGAAA
Coding sequences of Glyma16g27900
>Glyma16g27900.1   sequence type=CDS   gene model=Glyma16g27900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGGGTTAGTCCTTTGTTTCACTCTTTGCTCTTGATTTCTTCCCTTGTATTGGCTTCTCAAATCCATGTTTCCTCTGGGAAACTAGTCCCTGGACTATCATGGAATTACTATTTGTTGACATGTCCCAAGCTTGAGAGGATTATAAGGAAGCATCTTGAGGATGTCTTCGAGAAGGACAGTGGAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATGGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACACCGTGCTAACTTTGGTTTAAGGCAAGAGGCCATTGACGCCATTGAAAACCTTCGGGTTCTCATTTACAAGCAGTGTCTACCAGTTGTCTCATGCTCAGACATCCTTGTTATCGCAGCACGTGAAGCTGTTCGCCAATTAGGAGGCCCTGATTTTGACGTGCCACTGGGAAGAAAAGACGGCCTAGGACCAAACGCCACCGCGCCGGACAACCTACCGGCACCATTCTTCCGAACCGACGATCTTCTGAGAGGATTCGGAAATAGAGGTTTCGATGCCACCGATGTGGTCGCTCTCTCCGGCGCACACACCTACGGTCGTGCCCACTGTCCCTCCCTAGTGAACAGAACCATCGAAACGGACCCACCAATCGACCCAAACTTCAACAACAATTTGATAGCTACGTGTCCCAATGCCGAGTCCCCCAACACCGTTAATTTGGACGTGAGAACCCCCGTGAAGTTCGACAACATGTATTACATCAACCTCTTGAACCGCCAAGGAGTGTTCACTTCTGACCAGGACATCGCGGGCAGCCCCAAAACCAAGGAAATCGTGAACCAGTTCGCTTCAGACCAGAAACTGTTTTTTAAGAAATTTTCCGATGCTTTTGTGAAGGTGAGCCAGCTAGATGTGATAACGGATCGTATTGGGAAAGGGGAGATTCGTGATAAGTGCTTTGTTGCAAATAAGAGAAGATCTTCTATGGCGTCTGTGGTGGAAGAAGTAGTGGAATTGGCTCAGGAGATATAA

>Glyma16g27900.3   sequence type=CDS   gene model=Glyma16g27900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGGGTTAGTCCTTTGTTTCACTCTTTGCTCTTGATTTCTTCCCTTGTATTGGCTTCTCAAATCCATGTTTCCTCTGGGAAACTAGTCCCTGGACTATCATGGAATTACTATTTGTTGACATGTCCCAAGCTTGAGAGGATTATAAGGAAGCATCTTGAGGATGTCTTCGAGAAGGACAGTGGAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATTTAGGAGGCCCTGATTTTGACGTGCCACTGGGAAGAAAAGACGGCCTAGGACCAAACGCCACCGCGCCGGACAACCTACCGGCACCATTCTTCCGAACCGACGATCTTCTGAGAGGATTCGGAAATAGAGGTTTCGATGCCACCGATGTGGTCGCTCTCTCCGGCGCACACACCTACGGTCGTGCCCACTGTCCCTCCCTAGTGAACAGAACCATCGAAACGGACCCACCAATCGACCCAAACTTCAACAACAATTTGATAGCTACGTGTCCCAATGCCGAGTCCCCCAACACCGTTAATTTGGACGTGAGAACCCCCGTGAAGTTCGACAACATGTATTACATCAACCTCTTGAACCGCCAAGGAGTGTTCACTTCTGACCAGGACATCGCGGGCAGCCCCAAAACCAAGGAAATCGTGAACCAGTTCGCTTCAGACCAGAAACTGTTTTTTAAGAAATTTTCCGATGCTTTTGTGAAGGTGAGCCAGCTAGATGTGATAACGGATCGTATTGGGAAAGGGGAGATTCGTGATAAGTGCTTTGTTGCAAATAAGAGAAGATCTTCTATGGCGTCTGTGGTGGAAGAAGTAGTGGAATTGGCTCAGGAGATATAA
Predicted protein sequences of Glyma16g27900
>Glyma16g27900.1   sequence type=predicted peptide   gene model=Glyma16g27900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARVSPLFHSLLLISSLVLASQIHVSSGKLVPGLSWNYYLLTCPKLERIIRKHLEDVFEKDSGVAPGILRLFFHDCFPNGCDASILLNGDGDEKQHRANFGLRQEAIDAIENLRVLIYKQCLPVVSCSDILVIAAREAVRQLGGPDFDVPLGRKDGLGPNATAPDNLPAPFFRTDDLLRGFGNRGFDATDVVALSGAHTYGRAHCPSLVNRTIETDPPIDPNFNNNLIATCPNAESPNTVNLDVRTPVKFDNMYYINLLNRQGVFTSDQDIAGSPKTKEIVNQFASDQKLFFKKFSDAFVKVSQLDVITDRIGKGEIRDKCFVANKRRSSMASVVEEVVELAQEI*

>Glyma16g27900.3   sequence type=predicted peptide   gene model=Glyma16g27900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARVSPLFHSLLLISSLVLASQIHVSSGKLVPGLSWNYYLLTCPKLERIIRKHLEDVFEKDSGVAPGILRLFFHDCFPNLGGPDFDVPLGRKDGLGPNATAPDNLPAPFFRTDDLLRGFGNRGFDATDVVALSGAHTYGRAHCPSLVNRTIETDPPIDPNFNNNLIATCPNAESPNTVNLDVRTPVKFDNMYYINLLNRQGVFTSDQDIAGSPKTKEIVNQFASDQKLFFKKFSDAFVKVSQLDVITDRIGKGEIRDKCFVANKRRSSMASVVEEVVELAQEI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo